[2]
Rothberg, M.B.; Haessler, S.D.; Brown, R.B. Complications of viral influenza. Am. J. Med., 2008, 121(4), 258-264. [http://dx.doi.org/10.1016/j.amjmed.2007.10.040]. [PMID: 18374680].
[4]
Molinari, N.A.; Ortega-Sanchez, I.R.; Messonnier, M.L.; Thompson, W.W.; Wortley, P.M.; Weintraub, E.; Bridges, C.B. The annual impact of seasonal influenza in the US: Measuring disease burden and costs. Vaccine, 2007, 25(27), 5086-5096. [http://dx.doi.org/10.1016/j.vaccine.2007.03.046]. [PMID: 17544181].
[5]
Palese, P. Influenza: old and new threats. Nat. Med., 2004, 10(12)(Suppl.), S82-S87. [http://dx.doi.org/10.1038/nm1141]. [PMID: 15577936].
[6]
Monto, A.S.; Webster, R.G. Textbook of Influenza, 2013, 20-34.
[7]
Lamb, R.A.; Krug, R.M. Orthomyxoviridae: The viruses and their replication. In: n D. M. Knipe, P. M. Howley, &
B. N. Fields (Eds.), Fields Virology Philadelphia:; Lippincott-Raven Press, 1996.
[8]
Su, S.; Bi, Y.; Wong, G.; Gray, G.C.; Gao, G.F.; Li, S. Epidemiology, evolution, and recent outbreaks of avian influenza virus in China. J. Virol., 2015, 89(17), 8671-8676. [http://dx.doi.org/10.1128/JVI.01034-15]. [PMID: 26063419].
[9]
Koutsakos, M.; Nguyen, T.H.; Barclay, W.S.; Kedzierska, K. Knowns and unknowns of influenza B viruses. Future Microbiol., 2016, 11(1), 119-135. [http://dx.doi.org/10.2217/fmb.15.120]. [PMID: 26684590].
[10]
van de Sandt, C.E.; Bodewes, R.; Rimmelzwaan, G.F.; de Vries, R.D. Influenza B viruses: not to be discounted. Future Microbiol., 2015, 10(9), 1447-1465. [http://dx.doi.org/10.2217/fmb.15.65]. [PMID: 26357957].
[11]
Krammer, F.; Palese, P. Advances in the development of influenza virus vaccines. Nat. Rev. Drug Discov., 2015, 14(3), 167-182. [http://dx.doi.org/10.1038/nrd4529]. [PMID: 25722244].
[12]
Bouvier, N.M.; Palese, P. The biology of influenza viruses. Vaccine, 2008, 26(Suppl. 4), D49-D53. [http://dx.doi.org/10.1016/j.vaccine.2008.07.039]. [PMID: 19230160].
[13]
Hurt, A.C. The epidemiology and spread of drug resistant human influenza viruses. Curr. Opin. Virol., 2014, 8(0), 22-29. [http://dx.doi.org/10.1016/j.coviro.2014.04.009]. [PMID: 24866471].
[14]
Eisfeld, A.J.; Neumann, G.; Kawaoka, Y. At the centre: Influenza A virus ribonucleoproteins. Nat. Rev. Microbiol., 2015, 13(1), 28-41. [http://dx.doi.org/10.1038/nrmicro3367]. [PMID: 25417656].
[15]
Pflug, A.; Lukarska, M.; Resa-Infante, P.; Reich, S.; Cusack, S. Structural insights into RNA synthesis by the influenza virus transcription-replication machine. Virus Res., 2017, 234, 103-117. [http://dx.doi.org/10.1016/j.virusres.2017.01.013]. [PMID: 28115197].
[16]
Li, F.; Ma, C.; Wang, J. Inhibitors targeting the influenza virus hemagglutinin. Curr. Med. Chem., 2015, 22(11), 1361-1382. [http://dx.doi.org/10.2174/0929867322666150227153919]. [PMID: 25723505].
[17]
Wang, J.; Qiu, J.X.; Soto, C.; DeGrado, W.F. Structural and dynamic mechanisms for the function and inhibition of the M2 proton channel from influenza A virus. Curr. Opin. Struct. Biol., 2011, 21(1), 68-80. [http://dx.doi.org/10.1016/j.sbi.2010.12.002]. [PMID: 21247754].
[18]
Reich, S.; Guilligay, D.; Pflug, A.; Malet, H.; Berger, I.; Crépin, T.; Hart, D.; Lunardi, T.; Nanao, M.; Ruigrok, R.W.; Cusack, S. Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature, 2014, 516(7531), 361-366. [http://dx.doi.org/10.1038/nature14009]. [PMID: 25409151].
[20]
Osterholm, M.T.; Kelley, N.S.; Sommer, A.; Belongia, E.A. Efficacy and effectiveness of influenza vaccines: a systematic review and meta-analysis. Lancet Infect. Dis., 2012, 12(1), 36-44. [http://dx.doi.org/10.1016/S1473-3099(11)70295-X]. [PMID: 22032844].
[21]
Flannery, B.; Thaker, S.N.; Clippard, J.; Monto, A.S.; Ohmit, S.E.; Zimmerman, R.K.; Nowalk, M.P.; Gaglani, M.; Jackson, M.L.; Jackson, L.A.; Belongia, E.A.; McLean, H.Q.; Berman, L.; Foust, A.; Sessions, W.; Spencer, S.; Fry, A.M. Centers for Disease Control and Prevention (CDC). Interim estimates of 2013-14 seasonal influenza vaccine effectiveness - United States, February 2014. MMWR Morb. Mortal. Wkly. Rep., 2014, 63(7), 137-142. [PMID: 24553196].
[22]
Houser, K.; Subbarao, K. Influenza vaccines: Challenges and solutions. Cell Host Microbe, 2015, 17(3), 295-300. [http://dx.doi.org/10.1016/j.chom.2015.02.012]. [PMID: 25766291].
[23]
Ison, M.G. Clinical use of approved influenza antivirals: therapy and prophylaxis. Influenza Other Respir. Viruses, 2013, 7(Suppl. 1), 7-13. [http://dx.doi.org/10.1111/irv.12046]. [PMID: 23279892].
[24]
Koszalka, P.; Tilmanis, D.; Hurt, A.C. Influenza antivirals currently in late-phase clinical trial. Influenza Other Respir. Viruses, 2017, 11(3), 240-246. [http://dx.doi.org/10.1111/irv.12446]. [PMID: 28146320].
[25]
Wang, J.; Li, F.; Ma, C. Recent progress in designing inhibitors that target the drug-resistant M2 proton channels from the influenza A viruses. Biopolymers, 2015, 104(4), 291-309. [http://dx.doi.org/10.1002/bip.22623]. [PMID: 25663018].
[26]
Wang, J. M2 as a target to combat influenza drug resistance: What does the evidence say? Future Virol., 2016, 11(1), 1-4. [http://dx.doi.org/10.2217/fvl.15.95].
[27]
Loregian, A.; Mercorelli, B.; Nannetti, G.; Compagnin, C.; Palù, G. Antiviral strategies against influenza virus: Towards new therapeutic approaches. Cell. Mol. Life Sci., 2014, 71(19), 3659-3683. [http://dx.doi.org/10.1007/s00018-014-1615-2]. [PMID: 24699705].
[28]
Sheu, T.G.; Fry, A.M.; Garten, R.J.; Deyde, V.M.; Shwe, T.; Bullion, L.; Peebles, P.J.; Li, Y.; Klimov, A.I.; Gubareva, L.V. Dual resistance to adamantanes and oseltamivir among seasonal influenza A(H1N1) viruses: 2008-2010. J. Infect. Dis., 2011, 203(1), 13-17. [http://dx.doi.org/10.1093/infdis/jiq005]. [PMID: 21148491].
[29]
Moscona, A. Global transmission of oseltamivir-resistant influenza. N. Engl. J. Med., 2009, 360(10), 953-956. [http://dx.doi.org/10.1056/NEJMp0900648]. [PMID: 19258250].
[30]
Grigoryan, G.; Moore, D.T.; DeGrado, W.F. Transmembrane communication: general principles and lessons from the structure and function of the M2 proton channel, K+ channels, and integrin receptors. Annu. Rev. Biochem., 2011, 80(1), 211-237. [http://dx.doi.org/10.1146/annurev-biochem-091008-152423]. [PMID: 21548783].
[31]
Baz, M.; Abed, Y.; Papenburg, J.; Bouhy, X.; Hamelin, M.E.; Boivin, G. Emergence of oseltamivir-resistant pandemic H1N1 virus during prophylaxis. N. Engl. J. Med., 2009, 361(23), 2296-2297. [http://dx.doi.org/10.1056/NEJMc0910060]. [PMID: 19907034].
[32]
Okomo-Adhiambo, M.; Fry, A.M.; Su, S.; Nguyen, H.T.; Elal, A.A.; Negron, E.; Hand, J.; Garten, R.J.; Barnes, J.; Xiyan, X.; Villanueva, J.M.; Gubareva, L.V.; Group, U.S. Oseltamivir-resistant influenza A(H1N1)pdm09 viruses, United States, 2013-14. Emerg. Infect. Dis., 2015, 21(1), 136-141. [http://dx.doi.org/10.3201/eid2101.141006]. [PMID: 25532050].
[33]
Renaud, C.; Kuypers, J.; Englund, J.A. Emerging oseltamivir resistance in seasonal and pandemic influenza A/H1N1. J. Clin. Virol., 2011, 52(2), 70-78. [http://dx.doi.org/10.1016/j.jcv.2011.05.019]. [PMID: 21684202].
[34]
Govorkova, E.A. Consequences of resistance: in vitro fitness, in vivo infectivity, and transmissibility of oseltamivir-resistant influenza A viruses. Influenza Other Respir. Viruses, 2013, 7(Suppl. 1), 50-57. [http://dx.doi.org/10.1111/irv.12044]. [PMID: 23279897].
[35]
Hsu, J.; Santesso, N.; Mustafa, R.; Brozek, J.; Chen, Y.L.; Hopkins, J.P.; Cheung, A.; Hovhannisyan, G.; Ivanova, L.; Flottorp, S.A.; Saeterdal, I.; Wong, A.D.; Tian, J.; Uyeki, T.M.; Akl, E.A.; Alonso-Coello, P.; Smaill, F.; Schünemann, H.J. Antivirals for treatment of influenza: a systematic review and meta-analysis of observational studies. Ann. Intern. Med., 2012, 156(7), 512-524. [http://dx.doi.org/10.7326/0003-4819-156-7-201204030-00411]. [PMID: 22371849].
[36]
Yang, J.; Li, M.; Shen, X.; Liu, S. Influenza A virus entry inhibitors targeting the hemagglutinin. Viruses, 2013, 5(1), 352-373. [http://dx.doi.org/10.3390/v5010352]. [PMID: 23340380].
[37]
Kadam, R.U.; Wilson, I.A. Structural basis of influenza virus fusion inhibition by the antiviral drug Arbidol. Proc. Natl. Acad. Sci. USA, 2017, 114(2), 206-214. [http://dx.doi.org/10.1073/pnas.1617020114]. [PMID: 28003465].
[38]
Leneva, I.A.; Russell, R.J.; Boriskin, Y.S.; Hay, A.J. Characteristics of arbidol-resistant mutants of influenza virus: Implications for the mechanism of anti-influenza action of arbidol. Antiviral Res., 2009, 81(2), 132-140. [http://dx.doi.org/10.1016/j.antiviral.2008.10.009]. [PMID: 19028526].
[39]
Moss, R.B.; Hansen, C.; Sanders, R.L.; Hawley, S.; Li, T.; Steigbigel, R.T. A phase II study of DAS181, a novel host directed antiviral for the treatment of influenza infection. J. Infect. Dis., 2012, 206(12), 1844-1851. [http://dx.doi.org/10.1093/infdis/jis622]. [PMID: 23045618].
[40]
Rossignol, J.F. Nitazoxanide: a first-in-class broad-spectrum antiviral agent. Antiviral Res., 2014, 110, 94-103. [http://dx.doi.org/10.1016/j.antiviral.2014.07.014]. [PMID: 25108173].
[41]
Rossignol, J.F.; La Frazia, S.; Chiappa, L.; Ciucci, A.; Santoro, M.G. Thiazolides, a new class of anti-influenza molecules targeting viral hemagglutinin at the post-translational level. J. Biol. Chem., 2009, 284(43), 29798-29808. [http://dx.doi.org/10.1074/jbc.M109.029470]. [PMID: 19638339].
[42]
Stevaert, A.; Naesens, L. The influenza virus polymerase complex: an update on its structure, functions, and significance for antiviral drug design. Med. Res. Rev., 2016, 36(6), 1127-1173. [http://dx.doi.org/10.1002/med.21401]. [PMID: 27569399].
[43]
Furuta, Y.; Gowen, B.B.; Takahashi, K.; Shiraki, K.; Smee, D.F.; Barnard, D.L. Favipiravir (T-705), a novel viral RNA polymerase inhibitor. Antiviral Res., 2013, 100(2), 446-454. [http://dx.doi.org/10.1016/j.antiviral.2013.09.015]. [PMID: 24084488].
[44]
Sangawa, H.; Komeno, T.; Nishikawa, H.; Yoshida, A.; Takahashi, K.; Nomura, N.; Furuta, Y. Mechanism of action of T-705 ribosyl triphosphate against influenza virus RNA polymerase. Antimicrob. Agents Chemother., 2013, 57(11), 5202-5208. [http://dx.doi.org/10.1128/AAC.00649-13]. [PMID: 23917318].
[45]
Baranovich, T.; Wong, S-S.; Armstrong, J.; Marjuki, H.; Webby, R.J.; Webster, R.G.; Govorkova, E.A. T-705 (favipiravir) induces lethal mutagenesis in influenza A H1N1 viruses in vitro. J. Virol., 2013, 87(7), 3741-3751. [http://dx.doi.org/10.1128/JVI.02346-12]. [PMID: 23325689].
[46]
Te Velthuis, A.J.; Fodor, E. Influenza virus RNA polymerase: Insights into the mechanisms of viral RNA synthesis. Nat. Rev. Microbiol., 2016, 14(8), 479-493. [http://dx.doi.org/10.1038/nrmicro.2016.87]. [PMID: 27396566].
[47]
Boivin, S.; Cusack, S.; Ruigrok, R.W.; Hart, D.J. Influenza A virus polymerase: Structural insights into replication and host adaptation mechanisms. J. Biol. Chem., 2010, 285(37), 28411-28417. [http://dx.doi.org/10.1074/jbc.R110.117531]. [PMID: 20538599].
[48]
Hu, Y. EDITORIAL: Advances in developing versatile tools for the discovery of novel therapeutics. Curr. Top. Med. Chem., 2017, 17(20), 2233-2234. [http://dx.doi.org/10.2174/156802661720170707184419]. [PMID: 28799501].
[49]
Hu, Y.; Sneyd, H.; Dekant, R.; Wang, J.; Influenza, A. Influenza A virus nucleoprotein: A highly conserved multi-functional viral protein as a hot antiviral drug target. Curr. Top. Med. Chem., 2017, 17(20), 2271-2285. [http://dx.doi.org/10.2174/1568026617666170224122508]. [PMID: 28240183].
[50]
Beyleveld, G.; White, K.M.; Ayllon, J.; Shaw, M.L. New-generation screening assays for the detection of anti-influenza compounds targeting viral and host functions. Antiviral Res., 2013, 100(1), 120-132. [http://dx.doi.org/10.1016/j.antiviral.2013.07.018]. [PMID: 23933115].
[51]
Luytjes, W.; Krystal, M.; Enami, M.; Parvin, J.D.; Palese, P. Amplification, expression, and packaging of foreign gene by influenza virus. Cell, 1989, 59(6), 1107-1113. [http://dx.doi.org/10.1016/0092-8674(89)90766-6]. [PMID: 2598262].
[52]
Seong, B.L.; Brownlee, G.G. A new method for reconstituting influenza polymerase and RNA in vitro: A study of the promoter elements for cRNA and vRNA synthesis in vitro and viral rescue in vivo. Virology, 1992, 186(1), 247-260. [http://dx.doi.org/10.1016/0042-6822(92)90079-5]. [PMID: 1727600].
[53]
Neumann, G.; Hobom, G. Mutational analysis of influenza virus promoter elements in vivo. J. Gen. Virol., 1995, 76(Pt 7), 1709-1717. [http://dx.doi.org/10.1099/0022-1317-76-7-1709]. [PMID: 9049376].
[54]
Lutz, A.; Dyall, J.; Olivo, P.D.; Pekosz, A. Virus-inducible reporter genes as a tool for detecting and quantifying influenza A virus replication. J. Virol. Methods, 2005, 126(1-2), 13-20. [http://dx.doi.org/10.1016/j.jviromet.2005.01.016]. [PMID: 15847914].
[55]
Ozawa, M.; Shimojima, M.; Goto, H.; Watanabe, S.; Hatta, Y.; Kiso, M.; Furuta, Y.; Horimoto, T.; Peters, N.R.; Hoffmann, F.M.; Kawaoka, Y. A cell-based screening system for influenza A viral RNA transcription/replication inhibitors. Sci. Rep., 2013, 3, 1106. [http://dx.doi.org/10.1038/srep01106]. [PMID: 23346363].
[56]
Hoffmann, H-H.; Kunz, A.; Simon, V.A.; Palese, P.; Shaw, M.L. Broad-spectrum antiviral that interferes with de novo pyrimidine biosynthesis. Proc. Natl. Acad. Sci. USA, 2011, 108(14), 5777-5782. [http://dx.doi.org/10.1073/pnas.1101143108]. [PMID: 21436031].
[57]
Hoffmann, H.H.; Palese, P.; Shaw, M.L. Modulation of influenza virus replication by alteration of sodium ion transport and protein kinase C activity. Antiviral Res., 2008, 80(2), 124-134. [http://dx.doi.org/10.1016/j.antiviral.2008.05.008]. [PMID: 18585796].
[58]
Wang, Z.; Zhao, F.; Gao, Q.; Liu, Z.; Zhang, Y.; Li, X.; Li, Y.; Ma, W.; Deng, T.; Zhang, Z.; Cen, S. Establishment of a high-throughput assay to monitor influenza A virus RNA transcription and replication. PLoS One, 2015, 10(7)e0133558 [http://dx.doi.org/10.1371/journal.pone.0133558]. [PMID: 26196128].
[59]
Karlas, A.; Machuy, N.; Shin, Y.; Pleissner, K.P.; Artarini, A.; Heuer, D.; Becker, D.; Khalil, H.; Ogilvie, L.A.; Hess, S.; Mäurer, A.P.; Müller, E.; Wolff, T.; Rudel, T.; Meyer, T.F. Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication. Nature, 2010, 463(7282), 818-822. [http://dx.doi.org/10.1038/nature08760]. [PMID: 20081832].
[60]
Prusty, B.K.; Karlas, A.; Meyer, T.F.; Rudel, T. Genome-wide RNAi screen for viral replication in mammalian cell culture. Methods Mol. Biol., 2011, 721, 383-395. [http://dx.doi.org/10.1007/978-1-61779-037-9_24]. [PMID: 21431699].
[61]
Shapira, S.D.; Gat-Viks, I.; Shum, B.O.; Dricot, A.; de Grace, M.M.; Wu, L.; Gupta, P.B.; Hao, T.; Silver, S.J.; Root, D.E.; Hill, D.E.; Regev, A.; Hacohen, N. A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection. Cell, 2009, 139(7), 1255-1267. [http://dx.doi.org/10.1016/j.cell.2009.12.018]. [PMID: 20064372].
[62]
Hooker, L.; Strong, R.; Adams, R.; Handa, B.; Merrett, J.H.; Martin, J.A.; Klumpp, K. A sensitive, single-tube assay to measure the enzymatic activities of influenza RNA polymerase and other poly(A) polymerases: Application to kinetic and inhibitor analysis. Nucleic Acids Res., 2001, 29(13), 2691-2698. [http://dx.doi.org/10.1093/nar/29.13.2691]. [PMID: 11433013].
[63]
Newcomb, L.L.; Kuo, R.L.; Ye, Q.; Jiang, Y.; Tao, Y.J.; Krug, R.M. Interaction of the influenza a virus nucleocapsid protein with the viral RNA polymerase potentiates unprimed viral RNA replication. J. Virol., 2009, 83(1), 29-36. [http://dx.doi.org/10.1128/JVI.02293-07]. [PMID: 18945782].
[64]
Glickman, J.F.; Schmid, A.; Ferrand, S. Scintillation proximity assays in high-throughput screening. Assay Drug Dev. Technol., 2008, 6(3), 433-455. [http://dx.doi.org/10.1089/adt.2008.135]. [PMID: 18593378].
[65]
Sidwell, R.W.; Smee, D.F. In vitro and in vivo assay systems for study of influenza virus inhibitors. Antiviral Res., 2000, 48(1), 1-16. [http://dx.doi.org/10.1016/S0166-3542(00)00125-X]. [PMID: 11080536].
[66]
Reich, S.; Guilligay, D.; Cusack, S. An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase. Nucleic Acids Res., 2017, 45(6), 3353-3368. [PMID: 28126917].
[67]
Ju, H.; Zhang, J.; Huang, B.; Kang, D.; Huang, B.; Liu, X.; Zhan, P. Inhibitors of Influenza Virus Polymerase Acidic (PA) Endonuclease: Contemporary developments and perspectives. J. Med. Chem., 2017, 60(9), 3533-3551. [http://dx.doi.org/10.1021/acs.jmedchem.6b01227]. [PMID: 28118010].
[68]
Su, M.; Tan, J.; Lin, C.Y. Development of HIV-1 integrase inhibitors: Recent molecular modeling perspectives. Drug Discov. Today, 2015, 20(11), 1337-1348. [http://dx.doi.org/10.1016/j.drudis.2015.07.012]. [PMID: 26220090].
[69]
Song, M.S.; Kumar, G.; Shadrick, W.R.; Zhou, W.; Jeevan, T.; Li, Z.; Slavish, P.J.; Fabrizio, T.P.; Yoon, S.W.; Webb, T.R.; Webby, R.J.; White, S.W. Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor. Proc. Natl. Acad. Sci. USA, 2016, 113(13), 3669-3674. [http://dx.doi.org/10.1073/pnas.1519772113]. [PMID: 26976575].
[70]
Thierry, E.; Deprez, E.; Delelis, O. Different pathways leading to integrase inhibitors resistance. Front. Microbiol., 2017, 7, 2165. [http://dx.doi.org/10.3389/fmicb.2016.02165]. [PMID: 28123383].
[71]
Walsh, C.T.; Wencewicz, T.A. Prospects for new antibiotics: A molecule-centered perspective. J. Antibiot. , 2014, 67(1), 7-22. [http://dx.doi.org/10.1038/ja.2013.49]. [PMID: 23756684].
[72]
Jones, J.C.; Marathe, B.M.; Vogel, P.; Gasser, R.; Najera, I.; Govorkova, E.A. The PA endonuclease inhibitor RO-7 protects mice from lethal challenge with influenza A or B viruses. Antimicrob. Agents Chemother., 2017, 61(5), 2460-2416. [http://dx.doi.org/10.1128/AAC.02460-16]. [PMID: 28193653].
[73]
Jones, J.C.; Marathe, B.M.; Lerner, C.; Kreis, L.; Gasser, R.; Pascua, P.N.; Najera, I.; Govorkova, E.A. A novel endonuclease inhibitor exhibits broad-spectrum anti-influenza virus activity in vitro. Antimicrob. Agents Chemother., 2016, 60(9), 5504-5514. [http://dx.doi.org/10.1128/AAC.00888-16]. [PMID: 27381402].
[74]
Carcelli, M.; Rogolino, D.; Gatti, A.; De Luca, L.; Sechi, M.; Kumar, G.; White, S.W.; Stevaert, A.; Naesens, L. N-acylhydrazone inhibitors of influenza virus PA endonuclease with versatile metal binding modes. Sci. Rep., 2016, 6, 31500. [http://dx.doi.org/10.1038/srep31500]. [PMID: 27510745].
[75]
Yuan, S.; Chu, H.; Singh, K.; Zhao, H.; Zhang, K.; Kao, R.Y.; Chow, B.K.; Zhou, J.; Zheng, B.J. A novel small-molecule inhibitor of influenza A virus acts by suppressing PA endonuclease activity of the viral polymerase. Sci. Rep., 2016, 6, 22880. [http://dx.doi.org/10.1038/srep22880]. [PMID: 26956222].
[76]
Credille, C.V.; Chen, Y.; Cohen, S.M. Fragment-based identification of influenza endonuclease inhibitors. J. Med. Chem., 2016, 59(13), 6444-6454. [http://dx.doi.org/10.1021/acs.jmedchem.6b00628]. [PMID: 27291165].
[77]
Yuan, S.; Zhang, N.; Singh, K.; Shuai, H.; Chu, H.; Zhou, J.; Chow, B.K.; Zheng, B.J. Cross-protection of influenza A virus infection by a DNA aptamer targeting the PA endonuclease domain. Antimicrob. Agents Chemother., 2015, 59(7), 4082-4093. [http://dx.doi.org/10.1128/AAC.00306-15]. [PMID: 25918143].
[78]
DuBois, R.M.; Slavish, P.J.; Baughman, B.M.; Yun, M.K.; Bao, J.; Webby, R.J.; Webb, T.R.; White, S.W. Structural and biochemical basis for development of influenza virus inhibitors targeting the PA endonuclease. PLoS Pathog., 2012, 8(8)e1002830 [http://dx.doi.org/10.1371/journal.ppat.1002830]. [PMID: 22876176].
[79]
Noble, E.; Cox, A.; Deval, J.; Kim, B. Endonuclease substrate selectivity characterized with full-length PA of influenza A virus polymerase. Virology, 2012, 433(1), 27-34. [http://dx.doi.org/10.1016/j.virol.2012.07.008]. [PMID: 22841552].
[80]
Baughman, B.M.; Jake Slavish, P.; DuBois, R.M.; Boyd, V.A.; White, S.W.; Webb, T.R. Identification of influenza endonuclease inhibitors using a novel fluorescence polarization assay. ACS Chem. Biol., 2012, 7(3), 526-534. [http://dx.doi.org/10.1021/cb200439z]. [PMID: 22211528].
[81]
Kepp, O.; Galluzzi, L.; Lipinski, M.; Yuan, J.; Kroemer, G. Cell death assays for drug discovery. Nat. Rev. Drug Discov., 2011, 10(3), 221-237. [http://dx.doi.org/10.1038/nrd3373]. [PMID: 21358741].
[82]
Pautus, S.; Sehr, P.; Lewis, J.; Fortuné, A.; Wolkerstorfer, A.; Szolar, O.; Guilligay, D.; Lunardi, T.; Décout, J.L.; Cusack, S. New 7-methylguanine derivatives targeting the influenza polymerase PB2 cap-binding domain. J. Med. Chem., 2013, 56(21), 8915-8930. [http://dx.doi.org/10.1021/jm401369y]. [PMID: 24134208].
[83]
Clark, M.P.; Ledeboer, M.W.; Davies, I.; Byrn, R.A.; Jones, S.M.; Perola, E.; Tsai, A.; Jacobs, M.; Nti-Addae, K.; Bandarage, U.K.; Boyd, M.J.; Bethiel, R.S.; Court, J.J.; Deng, H.; Duffy, J.P.; Dorsch, W.A.; Farmer, L.J.; Gao, H.; Gu, W.; Jackson, K.; Jacobs, D.H.; Kennedy, J.M.; Ledford, B.; Liang, J.; Maltais, F.; Murcko, M.; Wang, T.; Wannamaker, M.W.; Bennett, H.B.; Leeman, J.R.; McNeil, C.; Taylor, W.P.; Memmott, C.; Jiang, M.; Rijnbrand, R.; Bral, C.; Germann, U.; Nezami, A.; Zhang, Y.; Salituro, F.G.; Bennani, Y.L.; Charifson, P.S. Discovery of a novel, first-in-class, orally bioavailable azaindole inhibitor (VX-787) of influenza PB2. J. Med. Chem., 2014, 57(15), 6668-6678. [http://dx.doi.org/10.1021/jm5007275]. [PMID: 25019388].
[84]
Farmer, L.J.; Clark, M.P.; Boyd, M.J.; Perola, E.; Jones, S.M.; Tsai, A.; Jacobs, M.D.; Bandarage, U.K.; Ledeboer, M.W.; Wang, T.; Deng, H.; Ledford, B.; Gu, W.; Duffy, J.P.; Bethiel, R.S.; Shannon, D.; Byrn, R.A.; Leeman, J.R.; Rijnbrand, R.; Bennett, H.B.; O’Brien, C.; Memmott, C.; Nti-Addae, K.; Bennani, Y.L.; Charifson, P.S. Discovery of novel, orally bioavailable β-amino acid azaindole inhibitors of influenza PB2. ACS Med. Chem. Lett., 2017, 8(2), 256-260. [http://dx.doi.org/10.1021/acsmedchemlett.6b00486]. [PMID: 28197322].
[85]
Bandarage, U.K.; Clark, M.P.; Perola, E.; Gao, H.; Jacobs, M.D.; Tsai, A.; Gillespie, J.; Kennedy, J.M.; Maltais, F.; Ledeboer, M.W.; Davies, I.; Gu, W.; Byrn, R.A.; Nti Addae, K.; Bennett, H.; Leeman, J.R.; Jones, S.M.; O’Brien, C.; Memmott, C.; Bennani, Y.; Charifson, P.S. Novel 2-substituted 7-azaindole and 7-azaindazole analogues as potential antiviral agents for the treatment of influenza. ACS Med. Chem. Lett., 2017, 8(2), 261-265. [http://dx.doi.org/10.1021/acsmedchemlett.6b00487]. [PMID: 28197323].
[86]
Yuan, S.; Chu, H.; Zhang, K.; Ye, J.; Singh, K.; Kao, R.Y.; Chow, B.K.; Zhou, J.; Zheng, B.J. A novel small-molecule compound disrupts influenza A virus PB2 cap-binding and inhibits viral replication. J. Antimicrob. Chemother., 2016, 71(9), 2489-2497. [http://dx.doi.org/10.1093/jac/dkw194]. [PMID: 27272726].
[87]
Byrn, R.A.; Jones, S.M.; Bennett, H.B.; Bral, C.; Clark, M.P.; Jacobs, M.D.; Kwong, A.D.; Ledeboer, M.W.; Leeman, J.R.; McNeil, C.F.; Murcko, M.A.; Nezami, A.; Perola, E.; Rijnbrand, R.; Saxena, K.; Tsai, A.W.; Zhou, Y.; Charifson, P.S. Preclinical activity of VX-787, a first-in-class, orally bioavailable inhibitor of the influenza virus polymerase PB2 subunit. Antimicrob. Agents Chemother., 2015, 59(3), 1569-1582. [http://dx.doi.org/10.1128/AAC.04623-14]. [PMID: 25547360].
[88]
Hatakeyama, D.; Shoji, M.; Yamayoshi, S.; Hirota, T.; Nagae, M.; Yanagisawa, S.; Nakano, M.; Ohmi, N.; Noda, T.; Kawaoka, Y.; Kuzuhara, T. A novel functional site in the PB2 subunit of influenza A virus essential for acetyl-CoA interaction, RNA polymerase activity, and viral replication. J. Biol. Chem., 2014, 289(36), 24980-24994. [http://dx.doi.org/10.1074/jbc.M114.559708]. [PMID: 25063805].
[89]
Perales, B.; Ortín, J. The influenza A virus PB2 polymerase subunit is required for the replication of viral RNA. J. Virol., 1997, 71(2), 1381-1385. [PMID: 8995663].
[90]
Brownlee, G.G.; Sharps, J.L. The RNA polymerase of influenza A virus is stabilized by interaction with its viral RNA promoter. J. Virol., 2002, 76(14), 7103-7113. [http://dx.doi.org/10.1128/JVI.76.14.7103-7113.2002]. [PMID: 12072510].
[91]
Fodor, E.; Crow, M.; Mingay, L.J.; Deng, T.; Sharps, J.; Fechter, P.; Brownlee, G.G. A single amino acid mutation in the PA subunit of the influenza virus RNA polymerase inhibits endonucleolytic cleavage of capped RNAs. J. Virol., 2002, 76(18), 8989-9001. [http://dx.doi.org/10.1128/JVI.76.18.8989-9001.2002]. [PMID: 12186883].
[92]
Perez, D.R.; Donis, R.O. Functional analysis of PA binding by influenza A virus PB1: Effects on polymerase activity and viral infectivity. J. Virol., 2001, 75(17), 8127-8136. [http://dx.doi.org/10.1128/JVI.75.17.8127-8136.2001]. [PMID: 11483758].
[93]
Ghanem, A.; Mayer, D.; Chase, G.; Tegge, W.; Frank, R.; Kochs, G.; García-Sastre, A.; Schwemmle, M. Peptide-mediated interference with influenza A virus polymerase. J. Virol., 2007, 81(14), 7801-7804. [http://dx.doi.org/10.1128/JVI.00724-07]. [PMID: 17494067].
[94]
Pflug, A.; Guilligay, D.; Reich, S.; Cusack, S. Structure of influenza A polymerase bound to the viral RNA promoter. Nature, 2014, 516(7531), 355-360. [http://dx.doi.org/10.1038/nature14008]. [PMID: 25409142].
[95]
Krug, R.M.; Aramini, J.M. Emerging antiviral targets for influenza A virus. Trends Pharmacol. Sci., 2009, 30(6), 269-277. [http://dx.doi.org/10.1016/j.tips.2009.03.002]. [PMID: 19428126].
[96]
Massari, S.; Goracci, L.; Desantis, J.; Tabarrini, O. Polymerase acidic protein-basic protein 1 (PA-PB1) protein-protein interaction as a target for next-generation anti-influenza therapeutics. J. Med. Chem., 2016, 59(17), 7699-7718. [http://dx.doi.org/10.1021/acs.jmedchem.5b01474]. [PMID: 27046062].
[97]
Muratore, G.; Goracci, L.; Mercorelli, B.; Foeglein, Á.; Digard, P.; Cruciani, G.; Palù, G.; Loregian, A. Small molecule inhibitors of influenza A and B viruses that act by disrupting subunit interactions of the viral polymerase. Proc. Natl. Acad. Sci. USA, 2012, 109(16), 6247-6252. [http://dx.doi.org/10.1073/pnas.1119817109]. [PMID: 22474359].
[98]
Massari, S.; Nannetti, G.; Desantis, J.; Muratore, G.; Sabatini, S.; Manfroni, G.; Mercorelli, B.; Cecchetti, V.; Palù, G.; Cruciani, G.; Loregian, A.; Goracci, L.; Tabarrini, O. A Broad Anti-influenza hybrid small molecule that potently disrupts the interaction of polymerase acidic protein-basic protein 1 (PA-PB1) subunits. J. Med. Chem., 2015, 58(9), 3830-3842. [http://dx.doi.org/10.1021/acs.jmedchem.5b00012]. [PMID: 25856229].
[99]
Tintori, C.; Laurenzana, I.; Fallacara, A.L.; Kessler, U.; Pilger, B.; Stergiou, L.; Botta, M. High-throughput docking for the identification of new influenza A virus polymerase inhibitors targeting the PA-PB1 protein-protein interaction. Bioorg. Med. Chem. Lett., 2014, 24(1), 280-282. [http://dx.doi.org/10.1016/j.bmcl.2013.11.019]. [PMID: 24314669].
[100]
Pagano, M.; Castagnolo, D.; Bernardini, M.; Fallacara, A.L.; Laurenzana, I.; Deodato, D.; Kessler, U.; Pilger, B.; Stergiou, L.; Strunze, S.; Tintori, C.; Botta, M. The fight against the influenza A virus H1N1: Synthesis, molecular modeling, and biological evaluation of benzofurazan derivatives as viral RNA polymerase inhibitors. ChemMedChem, 2014, 9(1), 129-150. [http://dx.doi.org/10.1002/cmdc.201300378]. [PMID: 24285596].
[101]
Trist, I.M.; Nannetti, G.; Tintori, C.; Fallacara, A.L.; Deodato, D.; Mercorelli, B.; Palù, G.; Wijtmans, M.; Gospodova, T.; Edink, E.; Verheij, M.; de Esch, I.; Viteva, L.; Loregian, A.; Botta, M. 4,6-diphenylpyridines as promising novel anti-influenza agents targeting the PA-PB1 protein-protein interaction: Structure-activity relationships exploration with the aid of molecular modeling. J. Med. Chem., 2016, 59(6), 2688-2703. [http://dx.doi.org/10.1021/acs.jmedchem.5b01935]. [PMID: 26924568].
[102]
He, X.; Zhou, J.; Bartlam, M.; Zhang, R.; Ma, J.; Lou, Z.; Li, X.; Li, J.; Joachimiak, A.; Zeng, Z.; Ge, R.; Rao, Z.; Liu, Y. Crystal structure of the polymerase PA(C)-PB1(N) complex from an avian influenza H5N1 virus. Nature, 2008, 454(7208), 1123-1126. [http://dx.doi.org/10.1038/nature07120]. [PMID: 18615018].
[103]
Yuan, S.; Chu, H.; Zhao, H.; Zhang, K.; Singh, K.; Chow, B.K.; Kao, R.Y.; Zhou, J.; Zheng, B.J. Identification of a small-molecule inhibitor of influenza virus via disrupting the subunits interaction of the viral polymerase. Antiviral Res., 2016, 125, 34-42. [http://dx.doi.org/10.1016/j.antiviral.2015.11.005]. [PMID: 26593979].
[104]
Yuan, S.; Chu, H.; Ye, J.; Singh, K.; Ye, Z.; Zhao, H.; Kao, R.Y.; Chow, B.K.; Zhou, J.; Zheng, B.J. Identification of a novel small-molecule compound targeting the influenza A virus polymerase PB1-PB2 interface. Antiviral Res., 2017, 137, 58-66. [http://dx.doi.org/10.1016/j.antiviral.2016.11.005]. [PMID: 27840201].
[105]
Pérez, D.R.; Donis, R.O.A. 48-amino-acid region of influenza A virus PB1 protein is sufficient for complex formation with PA. J. Virol., 1995, 69(11), 6932-6939. [PMID: 7474111].
[106]
González, S.; Zürcher, T.; Ortín, J. Identification of two separate domains in the influenza virus PB1 protein involved in the interaction with the PB2 and PA subunits: A model for the viral RNA polymerase structure. Nucleic Acids Res., 1996, 24(22), 4456-4463. [http://dx.doi.org/10.1093/nar/24.22.4456]. [PMID: 8948635].
[107]
Zürcher, T.; de la Luna, S.; Sanz-Ezquerro, J.J.; Nieto, A.; Ortín, J. Mutational analysis of the influenza virus A/Victoria/3/75 PA protein: Studies of interaction with PB1 protein and identification of a dominant negative mutant. J. Gen. Virol., 1996, 77(Pt 8), 1745-1749. [http://dx.doi.org/10.1099/0022-1317-77-8-1745]. [PMID: 8760421].
[108]
Toyoda, T.; Adyshev, D.M.; Kobayashi, M.; Iwata, A.; Ishihama, A. Molecular assembly of the influenza virus RNA polymerase: Determination of the subunit-subunit contact sites. J. Gen. Virol., 1996, 77(Pt 9), 2149-2157. [http://dx.doi.org/10.1099/0022-1317-77-9-2149]. [PMID: 8811014].
[109]
Ohtsu, Y.; Honda, Y.; Sakata, Y.; Kato, H.; Toyoda, T. Fine mapping of the subunit binding sites of influenza virus RNA polymerase. Microbiol. Immunol., 2002, 46(3), 167-175. [http://dx.doi.org/10.1111/j.1348-0421.2002.tb02682.x]. [PMID: 12008925].
[110]
Naito, T.; Momose, F.; Kawaguchi, A.; Nagata, K. Involvement of Hsp90 in assembly and nuclear import of influenza virus RNA polymerase subunits. J. Virol., 2007, 81(3), 1339-1349. [http://dx.doi.org/10.1128/JVI.01917-06]. [PMID: 17121807].
[111]
Hemerka, J.N.; Wang, D.; Weng, Y.; Lu, W.; Kaushik, R.S.; Jin, J.; Harmon, A.F.; Li, F. Detection and characterization of influenza A virus PA-PB2 interaction through a bimolecular fluorescence complementation assay. J. Virol., 2009, 83(8), 3944-3955. [http://dx.doi.org/10.1128/JVI.02300-08]. [PMID: 19193801].
[112]
Deng, Q.; Wang, D.; Xiang, X.; Gao, X.; Hardwidge, P.R.; Kaushik, R.S.; Wolff, T.; Chakravarty, S.; Li, F. Application of a split luciferase complementation assay for the detection of viral protein-protein interactions. J. Virol. Methods, 2011, 176(1-2), 108-111. [http://dx.doi.org/10.1016/j.jviromet.2011.04.028]. [PMID: 21645548].
[113]
Wunderlich, K.; Juozapaitis, M.; Ranadheera, C.; Kessler, U.; Martin, A.; Eisel, J.; Beutling, U.; Frank, R.; Schwemmle, M. Identification of high-affinity PB1-derived peptides with enhanced affinity to the PA protein of influenza A virus polymerase. Antimicrob. Agents Chemother., 2011, 55(2), 696-702. [http://dx.doi.org/10.1128/AAC.01419-10]. [PMID: 21135188].
[114]
Li, C.; Wang, Z.; Cao, Y.; Wang, L.; Ji, J.; Chen, Z.; Deng, T.; Jiang, T.; Cheng, G.; Qin, F.X. Screening for novel small-molecule inhibitors targeting the assembly of influenza virus polymerase complex by a bimolecular luminescence complementation-based reporter system. J. Virol., 2017, 91(5), 2282-16. [http://dx.doi.org/10.1128/JVI.02282-16]. [PMID: 28031371].
[115]
Shekhawat, S.S.; Ghosh, I. Split-protein systems: Beyond binary protein-protein interactions. Curr. Opin. Chem. Biol., 2011, 15(6), 789-797. [http://dx.doi.org/10.1016/j.cbpa.2011.10.014]. [PMID: 22070901].