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当代肿瘤药物靶点

Editor-in-Chief

ISSN (Print): 1568-0096
ISSN (Online): 1873-5576

Research Article

利用网格独立描述(GRIND)分析和SAR引导分子对接研究来探讨耐多药转运体ABCB1和ABCG2抑制剂选择性分布

作者: Talha Shafi, Ishrat Jabeen.

卷 17, 期 2, 2017

页: [177 - 190] 页: 14

弟呕挨: 10.2174/1568009616666160901094140

价格: $65

摘要

背景:结合ATP盒(ABC)转运蛋白,P-糖蛋白(P-gp,ABCB1)和乳腺癌耐药蛋白(BCRP/ABCG2)是药代动力学的主要决定因素,药物安全性和有效性从而调节广泛的内源性物质穿过细胞膜。这些转运蛋白在多种肿瘤中过度表达也与多药耐药(MDR)的发展有关,因此阻碍了癌症化疗的成功。这些外排转运蛋白的调节器与化疗药物联合可以提高抗癌药物有效胞内浓度。然而,由于广泛的和重叠的底物以及ABCB1、ABCG2调制器的特异性只产生毒性、有害的药物相互作用并因此导致药物治疗的后期失败。 目的:在研究是目标是确定ABCB1、ABCG2转运功能的选择性抑制的具体的3D结构要求。 方法:使用其最可能的结合构象从分子对接协议获取,网格独立分子描述符(GRIND)模型的选择性抑制剂的两个转运已得到开发。 结果:我们的研究结果表明,分子的形状和不同的氢键模式对ABCB1和ABCG2的药物的选择性作用起主导作用。此外,不同药效的不同距离以分子空间热点为特征,为两种转运提供了一个强大的选择性基础。研究结果也表明,ABCG2的选择性调节剂中两个氢键供体的存在的距离为8.4-8.8Å。 结论:我们的研究结果表明,MDR调节剂分子的形状随着氢键以及三维模式在确定两个靶点的选择性上起关键作用。

关键词: 多药耐药基因1(MDR1),乳腺癌耐药蛋白(BCRP)多药耐药,网格独立描述,分子对接,选择性分析

图形摘要

[1]
Szakacs, G.; Paterson, J.K.; Ludwig, J.A.; Booth-Genthe, C.; Gottesman, M.M. Targeting multidrug resistance in cancer. Nat. Rev. Drug Discov., 2006, 5(3), 219-234.
[2]
Gottesman, M.M. Mechanisms of cancer drug resistance. Annu. Rev. Med., 2002, 53(1), 615-627.
[3]
(a)Jonker, J.W.; Smit, J.W.; Brinkhuis, R.F.; Maliepaard, M.; Beijnen, J.H.; Schellens, J.H.; Schinkel, A.H. Role of breast cancer resistance protein in the bioavailability and fetal penetration of topotecan. J. Natl. Cancer Inst., 2000, 92(20), 1651-1656.
(b)Kruijtzer, C.M.; Beijnen, J.H.; Rosing, H.; ten Bokkel Huinink, W.W.; Schot, M.; Jewell, R.C.; Paul, E.M.; Schellens, J.H. Increased oral bioavailability of topotecan in combination with the breast cancer resistance protein and P-glycoprotein inhibitor GF120918. J. Clin. Oncol., 2002, 20(13), 2943-2950.
[4]
(a)Stewart, C.F.; Leggas, M.; Schuetz, J.D.; Panetta, J.C.; Cheshire, P.J.; Peterson, J.; Daw, N.; Jenkins, J.J., III; Gilbertson, R.; Germain, G.S.; Harwood, F.C.; Houghton, P.J. Gefitinib enhances the antitumor activity and oral bioavailability of irinotecan in mice. Cancer Res., 2004, 64(20), 7491-7499.
(b) Breedveld, P.; Pluim, D.; Cipriani, G.; Wielinga, P.; van Tellingen, O.; Schinkel, A.H.; Schellens, J.H. The effect of Bcrp1 (Abcg2) on the in vivo pharmacokinetics and brain penetration of imatinib mesylate (Gleevec): implications for the use of breast cancer resistance protein and P-glycoprotein inhibitors to enable the brain penetration of imatinib in patients. Cancer Res., 2005, 65(7), 2577-2582.
(c) Elmeliegy, M.A.; Carcaboso, A.M.; Tagen, M.; Bai, F.; Stewart, C.F. Role of ATP-binding cassette and solute carrier transporters in erlotinib CNS penetration and intracellular accumulation. Clin. Cancer Res., 2011, 17(1), 89-99.
[5]
(a) Wattel, E.; Solary, E.; Hecquet, B.; Caillot, D.; Ifrah, N.; Brion, A.; Milpied, N.; Janvier, M.; Guerci, A.; Rochant, H.; Cordonnier, C.; Dreyfus, F.; Veil, A.; Hoang-Ngoc, L.; Stoppa, A.M.; Gratecos, N.; Sadoun, A.; Tilly, H.; Brice, P.; Lioure, B.; Desablens, B.; Pignon, B.; Abgrall, J.P.; Leporrier, M.; Fenaux, P. Quinine improves results of intensive chemotherapy (IC) in myelodysplastic syndromes (MDS) expressing P-glycoprotein (PGP). Updated results of a randomized study. Groupe Francais des Myelodysplasies (GFM) and Groupe GOELAMS. Adv. Exp. Med. Biol., 1999, 457, 35-46.
(b) Minderman, H.; O’Loughlin, K.L.; Pendyala, L.; Baer, M.R. VX-710 (biricodar) increases drug retention and enhances chemosensitivity in resistant cells overexpressing P-glycoprotein, multidrug resistance protein, and breast cancer resistance protein. Clin. Cancer Res., 2004, 10(5), 1826-1834.
(c) Pusztai, L.; Wagner, P.; Ibrahim, N.; Rivera, E.; Theriault, R.; Booser, D.; Symmans, F.W.; Wong, F.; Blumenschein, G.; Fleming, D.R.; Rouzier, R.; Boniface, G.; Hortobagyi, G.N. Phase II study of tariquidar, a selective P-glycoprotein inhibitor, in patients with chemotherapy-resistant, advanced breast carcinoma. Cancer, 2005, 104(4), 682-691.
[6]
von Richter, O.; Burk, O.; Fromm, M.F.; Thon, K.P.; Eichelbaum, M.; Kivisto, K.T. Cytochrome P450 3A4 and P-glycoprotein expression in human small intestinal enterocytes and hepatocytes: a comparative analysis in paired tissue specimens. Clin. Pharmacol. Ther., 2004, 75(3), 172-183.
[7]
Hoffmaster, K.A.; Turncliff, R.Z.; LeCluyse, E.L.; Kim, R.B.; Meier, P.J.; Brouwer, K.L. P-glycoprotein expression, localization, and function in sandwich-cultured primary rat and human hepatocytes: relevance to the hepatobiliary disposition of a model opioid peptide. Pharm. Res., 2004, 21(7), 1294-1302.
[8]
Karssen, A.M.; Meijer, O.; Pons, D.; De Kloet, E.R. Localization of mRNA expression of P-glycoprotein at the blood-brain barrier and in the hippocampus. Ann. N. Y. Acad. Sci., 2004, 1032, 308-311.
[9]
Molsa, M.; Heikkinen, T.; Hakkola, J.; Hakala, K.; Wallerman, O.; Wadelius, M.; Wadelius, C.; Laine, K. Functional role of P-glycoprotein in the human blood-placental barrier. Clin. Pharmacol. Ther., 2005, 78(2), 123-131.
[10]
(a) Linton, K.J. Structure and function of ABC transporters. Physiology (Bethesda), 2007, 22, 122-130.
(b) Hill, C.R.; Jamieson, D.; Thomas, H.D.; Brown, C.D.; Boddy, A.V.; Veal, G.J. Characterisation of the roles of ABCB1, ABCC1, ABCC2 and ABCG2 in the transport and pharmacokinetics of actinomycin D in vitro and in vivo. Biochem. Pharmacol., 2013, 85(1), 29-37.
(c) Hu, M.; To, K.K.; Mak, V.W.; Tomlinson, B. The ABCG2 transporter and its relations with the pharmacokinetics, drug interaction and lipid-lowering effects of statins. Expert Opin. Drug Metab. Toxicol., 2011, 7(1), 49-62.
dHu, M.; Tomlinson, B. Evaluation of the pharmacokinetics and drug interactions of the two recently developed statins, rosuvastatin and pitavastatin. Expert Opin. Drug Metab. Toxicol., 2014, 10(1), 51-65.
[11]
(a) van Waterschoot, R.A.; ter Heine, R.; Wagenaar, E.; van der Kruijssen, C.M.; Rooswinkel, R.W.; Huitema, A.D.; Beijnen, J.H.; Schinkel, A.H. Effects of cytochrome P450 3A (CYP3A) and the drug transporters P-glycoprotein (MDR1/ABCB1) and MRP2 (ABCC2) on the pharmacokinetics of lopinavir. Br. J. Pharmacol., 2010, 160(5), 1224-1233.
(b) Windisch, A.; Timin, E.; Schwarz, T.; Stork-Riedler, D.; Erker, T.; Ecker, G.; Hering, S. Trapping and dissociation of propafenone derivatives in HERG channels. Br. J. Pharmacol., 2011, 162(7), 1542-1552.
(c) Zhang, S.; Zhou, Z.; Gong, Q.; Makielski, J.C.; January, C.T. Mechanism of block and identification of the verapamil binding domain to HERG potassium channels. Circ. Res., 1999, 84(9), 989-998.
[12]
(a) Li, J.; Jaimes, K.F.; Aller, S.G. Refined structures of mouse P-glycoprotein. Protein Sci., 2014, 23(1), 34-46.
(b) Szewczyk, P.; Tao, H.; McGrath, A.P.; Villaluz, M.; Rees, S.D.; Lee, S.C.; Doshi, R.; Urbatsch, I.L.; Zhang, Q.; Chang, G. Snapshots of ligand entry, malleable binding and induced helical movement in P-glycoprotein. Acta Crystallogr. D Biol. Crystallogr., 2015, 7(Pt 3), 732-741.
[13]
Demel, M.A.; Schwaha, R.; Kramer, O.; Ettmayer, P.; Haaksma, E.E.; Ecker, G.F. In silico prediction of substrate properties for ABC-multidrug transporters. Expert Opin. Drug Metab. Toxicol., 2008, 4(9), 1167-1180.
[14]
(a) Allen, J.D.; van Loevezijn, A.; Lakhai, J.M.; van der Valk, M.; van Tellingen, O.; Reid, G.; Schellens, J.H.; Koomen, G-J.; Schinkel, A.H. Potent and specific inhibition of the breast cancer resistance protein multidrug transporter in vitro and in mouse intestine by a novel analogue of fumitremorgin C 1 this work was supported in part by grant NKI 97-1433 from the Dutch Cancer Society (to AHS). Synthesis investigations by A. v. L. and GJ. K. were supported by the Netherlands Research Council for Chemical Sciences (NWO/CW) and the Netherlands Technology Foundation (STW). 1. Mol. Cancer Ther., 2002, 1(6), 417-425.
(b) Boumendjel, A.; Macalou, S.; Valdameri, G.; Pozza, A.; Gauthier, C.; Arnaud, O.; Nicolle, E.; Magnard, S.; Falson, P.; Terreux, R.; Carrupt, P.A.; Payen, L.; Di Pietro, A. Targeting the multidrug ABCG2 transporter with flavonoidic inhibitors: in vitro optimization and in vivo validation. Curr. Med. Chem., 2011, 18(22), 3387-3401.
(c) Fox, E.; Bates, S.E. Tariquidar (XR9576): a P-glycoprotein drug efflux pump inhibitor. Expert Rev. Anticancer Ther., 2007, 7(4), 447-459.
[15]
Pastor, M.; Cruciani, G.; McLay, I.; Pickett, S.; Clementi, S. GRid-INdependent descriptors (GRIND): a novel class of alignment-independent three-dimensional molecular descriptors. J. Med. Chem., 2000, 43(17), 3233-3243.
[16]
Duran, A.; Martinez, G.C.; Pastor, M. Development and validation of AMANDA, a new algorithm for selecting highly relevant regions in Molecular Interaction Fields. J. Chem. Inf. Model., 2008, 48(9), 1813-1823.
[17]
Jabeen, I.; Wetwitayaklung, P.; Klepsch, F.; Parveen, Z.; Chiba, P.; Ecker, G.F. Probing the stereoselectivity of P-glycoprotein-synthesis, biological activity and ligand docking studies of a set of enantiopure benzopyrano[3,4-b][1,4]oxazines. Chem. Commun. (Camb.), 2011, 47(9), 2586-2588.
[18]
Magrane, M.; Consortium, U. UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford), 2011, 2011, bar009..
[19]
Sievers, F.; Wilm, A.; Dineen, D.; Gibson, T.J.; Karplus, K.; Li, W.; Lopez, R.; McWilliam, H.; Remmert, M.; Soding, J.; Thompson, J.D.; Higgins, D.G. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol., 2011, 7, 539.
[20]
Waterhouse, A.M.; Procter, J.B.; Martin, D.M.; Clamp, M.; Barton, G.J. Jalview Version 2--a multiple sequence alignment editor and analysis workbench. Bioinformatics, 2009, 25(9), 1189-1191.
[21]
Aller, S.G.; Yu, J.; Ward, A.; Weng, Y.; Chittaboina, S.; Zhuo, R.; Harrell, P.M.; Trinh, Y.T.; Zhang, Q.; Urbatsch, I.L. Structure of P-glycoprotein reveals a molecular basis for poly-specific drug binding. Science, 2009, 323(5922), 1718-1722.
[22]
Shen, M.Y.; Sali, A. Statistical potential for assessment and prediction of protein structures. Protein Sci., 2006, 15(11), 2507-2254.
[23]
Colovos, C.; Yeates, T.O. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci., 1993, 2(9), 1511-1519.
[24]
Lovell, S.C.; Davis, I.W.; Arendall, W.B., III; de Bakker, P.I.; Word, J.M.; Prisant, M.G.; Richardson, J.S.; Richardson, D.C. Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins, 2003, 50(3), 437-450.
[25]
Jones, G.; Willett, P.; Glen, R.C. Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation. J. Mol. Biol., 1995, 245(1), 43-53.
[26]
Rosenberg, M.F.; Velarde, G.; Ford, R.C.; Martin, C.; Berridge, G.; Kerr, I.D.; Callaghan, R.; Schmidlin, A.; Wooding, C.; Linton, K.J. Repacking of the transmembrane domains of P‐glycoprotein during the transport ATPase cycle. EMBO J., 2001, 20(20), 5615-5625.
[27]
(a)Cramer, J.; Kopp, S.; Bates, S.E.; Chiba, P.; Ecker, G.F. Multispecificity of drug transporters: probing inhibitor selectivity for the human drug efflux transporters ABCB1 and ABCG2. ChemMedChem, 2007, 2(12), 1783-1788.
(b)Kühnle, M.; Egger, M.; Müller, C.; Mahringer, A.; Bernhardt, G.n.; Fricker, G.; König, B.; Buschauer, A. Potent and selective inhibitors of breast cancer resistance protein (ABCG2) derived from the p-glycoprotein (ABCB1) modulator tariquidar. J. Med. Chem., 2009, 52(4), 1190-1197.
[28]
(a)Jabeen, I.; Pleban, K.; Rinner, U.; Chiba, P.; Ecker, G.F. Structure–activity relationships, ligand efficiency, and lipophilic efficiency profiles of benzophenone-type inhibitors of the multidrug transporter p-glycoprotein. J. Med. Chem., 2012, 55(7), 3261-3273.
(b)Klepsch, F.; Chiba, P.; Ecker, G.F. Exhaustive Sampling of Docking Poses Reveals Binding Hypotheses for Propafenone Type Inhibitors of P-Glycoprotein. PLOS Comput. Biol., 2011, 7(5), e1002036.
(c)Chiba, P.; Tell, B.; Jager, W.; Richter, E.; Hitzler, M.; Ecker, G. Studies on propafenone-type modulators of multidrug-resistance IV1): synthesis and pharmacological activity of 5-hydroxy and 5-benzyloxy derivatives. Arch. Pharm. (Weinheim), 1997, 330(11), 343-347.
[29]
Chang, C.; Ekins, S.; Bahadduri, P.; Swaan, P.W. Pharmacophore-based discovery of ligands for drug transporters. Adv. Drug Deliv. Rev., 2006, 58(12-13), 1431-1450.
[30]
Rosenberg, M.F.; Bikadi, Z.; Chan, J.; Liu, X.; Ni, Z.; Cai, X.; Ford, R.C.; Mao, Q. The human breast cancer resistance protein (BCRP/ABCG2) shows conformational changes with mitoxantrone. Structure (London, England : 1993),, 2010, 14(8), 482-493.
[31]
(a)Ecker, G.F.; Csaszar, E.; Kopp, S.; Plagens, B.; Holzer, W.; Ernst, W.; Chiba, P. Identification of ligand-binding regions of p-glycoprotein by activated-pharmacophore photoaffinity labeling and matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry. Mol. Pharmacol., 2002, 61(3), 637-648.
(b)Pleban, K.; Kopp, S.; Csaszar, E.; Peer, M.; Hrebicek, T.; Rizzi, A.; Ecker, G.F.; Chiba, P. P-glycoprotein substrate binding domains are located at the transmembrane domain/transmembrane domain interfaces: a combined photoaffinity labeling-protein homology modeling approach. Mol. Pharmacol., 2005, 67(2), 365-374.
[32]
(a)Loo, T.W.; Clarke, D.M. Defining the drug-binding site in the human multidrug resistance P-glycoprotein using a methan-ethiosulfonate analog of verapamil, MTS-verapamil. J. Biol. Chem., 2001, 276(18), 14972-14979.
(b)Loo, T.W.; Bartlett, M.C.; Clarke, D.M. Methanethiosulfonate derivatives of rhodamine and verapamil activate human P-glycoprotein at different sites. J. Biol. Chem., 2003, 278(50), 50136-50141.
[33]
Sareila, O.; Korhonen, R.; Kärpänniemi, O.; Nieminen, R.; Kankaanranta, H.; Moilanen, E. JAK inhibitors AG-490 and WHI-P154 decrease IFN-γ-induced iNOS expression and NO production in macrophages. Mediators Inflamm., 2006, 2006(2), 16161.
[34]
Bollag, G.; Hirth, P.; Tsai, J.; Zhang, J.; Ibrahim, P.N.; Cho, H.; Spevak, W.; Zhang, C.; Zhang, Y.; Habets, G.; Burton, E.A.; Wong, B.; Tsang, G.; West, B.L.; Powell, B.; Shellooe, R.; Marimuthu, A.; Nguyen, H.; Zhang, K.Y.; Artis, D.R.; Schlessinger, J.; Su, F.; Higgins, B.; Iyer, R.; D’Andrea, K.; Koehler, A.; Stumm, M.; Lin, P.S.; Lee, R.J.; Grippo, J.; Puzanov, I.; Kim, K.B.; Ribas, A.; McArthur, G.A.; Sosman, J.A.; Chapman, P.B.; Flaherty, K.T.; Xu, X.; Nathanson, K.L.; Nolop, K. Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma. Nature, 2010, 467(7315), 596-599.
[35]
(a)Vispute, S.G.; Cheng, J.; Sun, Y.; Sodani, K.S.; Singh, S.; Pan, Y.; Talele, T.; Ashby, C.R., Jr; Chen, Z. Vemurafenib (PLX4032, Zelboraf ®), a BRAF inhibitor, modulates ABCB1-, ABCG2-, and ABCC10-mediated multidrug resistance. J. Cancer Res. Updates, 2013, 2, 11.
(b)Zhang, H.; Zhang, Y.K.; Wang, Y.J.; Kathawala, R.J.; Patel, A.; Zhu, H.; Sodani, K.; Talele, T.T.; Ambudkar, S.V.; Chen, Z.S.; Fu, L.W. WHI-P154 enhances the chemotherapeutic effect of anticancer agents in ABCG2-overexpressing cells. Cancer Sci., 2014, 105(8), 1071-1078.
[36]
Caron, G.; Ermondi, G. Influence of conformation on GRIND-based three-dimensional quantitative structure−activity relationship (3D-QSAR). J. Med. Chem., 2007, 50(20), 5039-5042.
[37]
Baroni, M.; Costantino, G.; Cruciani, G.; Riganelli, D.; Valigi, R.; Clementi, S. Generating optimal linear PLS estimations (GOLPE): an advanced chemometric tool for handling 3D-QSAR problems. Mol. Inform., 1993, 12(1), 9-20.
[38]
Jabeen, I.; Wetwitayaklung, P.; Chiba, P.; Pastor, M.; Ecker, G.F. 2D- and 3D-QSAR studies of a series of benzopyranes and benzopyrano[3,4b][1,4]-oxazines as inhibitors of the multidrug transporter P-glycoprotein. J. Comput. Aided Mol. Des., 2013, 27(2), 161-171.
[39]
Crivori, P.; Reinach, B.; Pezzetta, D.; Poggesi, I. Computational models for identifying potential P-glycoprotein substrates and inhibitors. Mol. Pharm., 2006, 3(1), 33-44.
[40]
Broccatelli, F.; Carosati, E.; Neri, A.; Frosini, M.; Goracci, L.; Oprea, T.I.; Cruciani, G. A Novel Approach for predicting p-glycoprotein (ABCB1) inhibition using molecular interaction fields. J. Med. Chem., 2011, 54(6), 1740-1751.
[41]
Boccard, J.; Bajot, F.; Di Pietro, A.; Rudaz, S.; Boumendjel, A.; Nicolle, E.; Carrupt, P.A. A 3D linear solvation energy model to quantify the affinity of flavonoid derivatives toward P-glycoprotein. Eur. J. Pharm. Sci., 2009, 36(2-3), 254-264.
[42]
Shukla, S.; Kouanda, A.; Silverton, L.; Talele, T.T.; Ambudkar, S.V. Pharmacophore modeling of nilotinib as an inhibitor of ATP-binding cassette drug transporters and BCR-ABL kinase using a three-dimensional quantitative structure-activity relationship approach. Mol. Pharm., 2014, 11(7), 2313-2322.

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