Generic placeholder image

Letters in Organic Chemistry

Editor-in-Chief

ISSN (Print): 1570-1786
ISSN (Online): 1875-6255

Research Article

Distinguishment of Weak Interactions of Hydrogen Atoms Bound to Carbon Atoms: X-Ray Crystal Structural and Hirshfeld Surface Analyses of 2- Hydroxy-7-methoxy-3-(2,4,6-trimethylbenzoyl)naphthalene with the 2- Methoxylated Homologue

Author(s): Kikuko Iida, Toyokazu Muto, Miyuki Kobayashi, Hiroaki Iitsuka, Kun Li, Noriyuki Yonezawa* and Akiko Okamoto*

Volume 19, Issue 9, 2022

Published on: 16 February, 2022

Page: [757 - 765] Pages: 9

DOI: 10.2174/1570178619666211231105233

Price: $65

Abstract

X-ray crystal and Hirshfeld surface analyses of 2-hydroxy-7-methoxy-3-(2,4,6- trimethylbenzoyl)naphthalene and its 2-methoxylated homologue show quantitatively and visually distinct molecular contacts in crystals and minute differences in the weak intermolecular interactions. The title compound has a helical tubular packing, where molecules are piled in a two-folded head-to-tail fashion. The homologue has a tight zigzag molecular string lined up behind each other via nonclassical intermolecular hydrogen bonds between the carbonyl oxygen atom and the hydrogen atom of the naphthalene ring. The dnorm index obtained from the Hirshfeld surface analysis quantitatively demonstrates stronger molecular contacts in the homologue, an ethereal compound, than in the title compound, an alcohol, which is consistent with the higher melting temperature of the former than the latter. Stabilization through the significantly weak intermolecular nonclassical hydrogen bonding interactions in the homologue surpasses the stability imparted by the intramolecular C=O…H–O classical hydrogen bonds in the title compound. The classical hydrogen bond places the six-membered ring in the concave of the title molecule. The hydroxy group opposingly disturbs the molecular aggregation of the title compound, as demonstrated by the distorted H…H interactions covering the molecular surface, owing to the rigid molecular conformation. The position of effective interactions predominate over the strength of the classical/nonclassical hydrogen bonds in the two compounds.

Keywords: Non-coplanarly accumulated aromatic rings, weak interactions, Hirshfeld surface analysis, classical hydrogen bonds, nonclassical hydrogen bonds, H…H interactions.

Graphical Abstract

[1]
Desiraju, G.R. Acc. Chem. Res., 1991, 24, 290-296.
[http://dx.doi.org/10.1021/ar00010a002]
[2]
Desiraju, G.R. Acc. Chem. Res., 1996, 29(9), 441-449.
[http://dx.doi.org/10.1021/ar950135n] [PMID: 23618410]
[3]
Budiman, Y.P.; Jayaraman, A.; Friedrich, A.; Kerner, F.; Radius, U.; Marder, T.B. J. Am. Chem. Soc., 2020, 142(13), 6036-6050.
[http://dx.doi.org/10.1021/jacs.9b11871] [PMID: 32134642]
[4]
Eisberg, J.G.D.; Anderson, S.N.; Berreau, L.M.; Tierney, D.L.; Reinheimer, E.W. Dalton Trans., 2021, 50(5), 1712-1720.
[http://dx.doi.org/10.1039/D0DT04074F] [PMID: 33447836]
[5]
Gargallo, R.; Aviñó, A.; Eritja, R.; Jarosova, P.; Mazzini, S.; Scaglioni, L.; Taborsky, P. Spectrochim. Acta A Mol. Biomol. Spectrosc., 2021, 248, 119185.
[http://dx.doi.org/10.1016/j.saa.2020.119185] [PMID: 33234477]
[6]
Desiraju, G.R. Angew. Chem. Int. Ed. Engl., 1995, 34, 2311-2327.
[http://dx.doi.org/10.1002/anie.199523111]
[7]
Suzuki, S.; Green, P.G.; Bumgarner, R.E.; Dasgupta, S.; Goddard, W.A., III; Blake, G.A. Science, 1992, 257(5072), 942-945.
[http://dx.doi.org/10.1126/science.257.5072.942] [PMID: 17789637]
[8]
Gilli, O.; Bertolasi, V.; Ferretti, V.; Gilli, G. J. Am. Chem. Soc., 1994, 116, 909-915.
[http://dx.doi.org/10.1021/ja00082a011]
[9]
Steiner, T. Chem. Commun. (Camb.), 1997, 727-734.
[http://dx.doi.org/10.1039/a603049a]
[10]
Umezawa, Y.; Tsuboyama, S.; Honda, K.; Uzawa, J.; Nishio, M. Bull. Chem. Soc. Jpn., 1998, 71(5), 1207-1213.
[http://dx.doi.org/10.1246/bcsj.71.1207]
[11]
Prasanna, M.D.; Row, T.N.G. CrystEngComm, 2000, 2, 134-140.
[http://dx.doi.org/10.1039/b004241m]
[12]
Bowse, R.; Weiss, H-C.; Blaser, D. Angew. Chem. Int. Ed. Engl., 1999, 38(7), 988-992.
[http://dx.doi.org/10.1002/(SICI)1521-3773(19990401)38:7<988:AID-ANIE988>3.0.CO;2-0] [PMID: 29711877]
[13]
Koch, U.; Popelier, P.L.A. J. Phys. Chem., 1995, 99(24), 9747-9754.
[http://dx.doi.org/10.1021/j100024a016]
[14]
Gopalan, R.S.; Kumardhas, P.; Kulkarni, G.U.; Rao, C.N.R. J. Mol. Struct., 2000, 521, 97-106.
[http://dx.doi.org/10.1016/S0022-2860(99)00293-8]
[15]
Palani, V.; Perea, M.A.; Gardner, K.E.; Sarpong, R. Chem. Sci. (Camb.), 2020, 12(4), 1528-1534.
[http://dx.doi.org/10.1039/D0SC06317G] [PMID: 34163915]
[16]
Luo, X.; Li, W.; Lu, H.; Deng, G.; Yang, Y.; Yang, C.; Liang, Y. Chin. Chem. Lett., 2021, 32, 713-716.
[http://dx.doi.org/10.1016/j.cclet.2020.07.005]
[17]
Guo, Q.; Tao, L.; Liu, C.; Zhao, X.; Wan, D.; Zhang, J.; Ai, J. Li. J. Chin. Chem. Lett., 2021, 32, 425-428.
[http://dx.doi.org/10.1016/j.cclet.2020.05.010]
[18]
Yanagi, T.; Tanaka, T.; Yorimitsu, H. Chem. Sci. (Camb.), 2021, 12(8), 2784-2793.
[http://dx.doi.org/10.1039/D1SC00044F] [PMID: 34164042]
[19]
Huang, Y.; Lv, X.; Song, H.; Liu, Y.; Wang, Q. Chin. Chem. Lett., 2020, 31, 1572-1575.
[http://dx.doi.org/10.1016/j.cclet.2019.11.028]
[20]
Cheng, Y.; Yu, S.; He, Y.; An, G.; Li, G. Yang. Z. Chem. Sci. (Camb.), 2021, 12(9), 3216-3225.
[http://dx.doi.org/10.1039/D0SC05409G] [PMID: 34164090]
[21]
Okamoto, A.; Yonezawa, N. J. Synth. Org. Chem. Jpn., 2015, 73(4), 339-360.
[http://dx.doi.org/10.5059/yukigoseikyokaishi.73.339]
[22]
Okamoto, A.; Yonezawa, N. Chem. Lett., 2009, 38(9), 914-915.
[http://dx.doi.org/10.1246/cl.2009.914]
[23]
Okamoto, A.; Mitsui, R.; Oike, H.; Yonezawa, N. Chem. Lett., 2011, 40(11), 1283-1284.
[http://dx.doi.org/10.1246/cl.2011.1283]
[24]
Ogata, K.; Mido, T. Siqingaowa, Noguchi K.; Yonezawa, N.; Okamoto. Anal. Chem. Lett., 2019, 48(12), 1522-1525.
[http://dx.doi.org/10.1246/cl.190663]
[25]
Mido, T.; Iitsuka, H.; Kobayashi, M.; Noguchi, K.; Yonezawa, N.; Okamoto, A. Chem. Lett., 2020, 49(3), 295-298.
[http://dx.doi.org/10.1246/cl.190903]
[26]
Mohri, S.; Yoshiwaka, S.; Isozaki, K.; Yonezawa, N.; Okamoto, A. Acta Crystallogr., 2013, 69(Pt 12), 1541-1544.
[http://dx.doi.org/10.1107/S0108270113030771] [PMID: 24311508]
[27]
Yoshiwaka, S.; Sasagawa, K.; Noguchi, K.; Yonezawa, N.; Okamoto, A. Acta Crystallogr. C Struct. Chem., 2014, 70(Pt 12), 1096-1100.
[http://dx.doi.org/10.1107/S2053229614022967] [PMID: 25471405]
[28]
Muto, T.; Iida, K.; Noguchi, K.; Yonezawa, N.; Okamoto, A. Acta Crystallogr. E Crystallogr. Commun., 2019, 75(Pt 10), 1418-1422.
[http://dx.doi.org/10.1107/S2056989019012118] [PMID: 31636968]
[29]
Mohri, S.; Ohisa, S.; Isozaki, K.; Yonezawa, N.; Okamoto, A. Acta Crystallogr. C Struct. Chem., 2015, 71(Pt 5), 344-350.
[http://dx.doi.org/10.1107/S2053229615005720] [PMID: 25940888]
[30]
Kato, Y.; Nagasawa, A.; Tsumuki, T.; Okamoto, A.; Yonezawa, N. Acta Crystallogr. Sect. E Struct. Rep. Online, 2010, 66(Pt 11), o2939.
[http://dx.doi.org/10.1107/S1600536810042662] [PMID: 21589109]
[31]
Kato, Y.; Nagasawa, A.; Kataoka, K.; Okamoto, A.; Yonezawa, N. Acta Crystallogr. Sect. E Struct. Rep. Online, 2010, 66(Pt 11), o2795.
[http://dx.doi.org/10.1107/S160053681004016X] [PMID: 21588992]
[32]
Kato, Y.; Takeuchi, R.; Muto, T.; Okamoto, A.; Yonezawa, N. Acta Crystallogr. Sect. E Struct. Rep. Online, 2011, 67(Pt 3), o668.
[http://dx.doi.org/10.1107/S1600536811005630] [PMID: 21522417]
[33]
Spackman, M.A.; Jayatilaka, D. CrystEngComm, 2009, 11, 19-32.
[http://dx.doi.org/10.1039/B818330A]
[34]
Muto, T.; Sasagawa, K.; Okamoto, A.; Oike, H.; Yonezawa, N. Acta Crystallogr. Sect. E Struct. Rep. Online, 2011, 67(Pt 11), o3062.
[http://dx.doi.org/10.1107/S1600536811042401] [PMID: 22220071]
[35]
McKinnon, J.J.; Jayatilaka, D.; Spackman, M.A. Chem. Commun. (Camb.), 2007, 37, 3814-3816.
[http://dx.doi.org/10.1039/b704980c] [PMID: 18217656]
[36]
Turner, M.J.; McKinnon, J.J.; Wolff, S.K.; Grimwood, D.J.; Spackman, P.R.; Jayatilaka, D.; Spackman, M.A. CrystalExplorer17. University of Western Australia; , 2017. Available from: hirsh-feldsurface.net
[37]
Armarego, W.L.F.; Perrin, D.D.P. Purification of Laboratory Chemicals, Fourth; Reed Educational and Professional Publishing Ltd: Oxford, 1996, pp. 9-206.
[38]
Domasevitch, K.V.; Solntsev, P.V.; Krautscheid, H.; Zhylenko, I.S.; Rusanov, E.B.; Chernega, A.N. Chem. Commun. (Camb.), 2012, 48(47), 5847-5849.
[http://dx.doi.org/10.1039/c2cc31770b] [PMID: 22558639]
[39]
Okamoto, A.; Mitsui, R.; Watanabe, S.; Tsubouchi, T.; Yonezawa, N. Int. J. Org. Chem. (Irvine), 2012, 2, 194-201.
[http://dx.doi.org/10.4236/ijoc.2012.23029]
[40]
Rigaku; In: Rigaku Corporation: Tokyo, Japan, 1998.
[41]
Rigaku. CrystalStructure; Rigaku Corporation: Tokyo, Japan, 2010.
[42]
Burla, M.C.; Caliandro, R.; Camalli, M.; Carrozzini, B.; Cascarano, G.L.; De Caro, L.; Giacovazzo, C.; Polidori, G.; Siliqi, D.; Spagna, R. J. Appl. Cryst., 2007, 40, 609-613.
[http://dx.doi.org/10.1107/S0021889807010941]
[43]
Sheldrick, G.M. Acta Crystallogr. A, 2008, 64(Pt 1), 112-122.
[http://dx.doi.org/10.1107/S0108767307043930] [PMID: 18156677]
[44]
Dolomanov, O.V.; Bourhis, L.J.; Gildea, R.J.; Howard, J.A.K.; Puschmann, H. J. Appl. Cryst., 2009, 42, 339-341.
[http://dx.doi.org/10.1107/S0021889808042726]

Rights & Permissions Print Cite
© 2024 Bentham Science Publishers | Privacy Policy