[1]
Ralston, C.Y.; Sclavi, B.; Sullivan, M.; Deras, M.L.; Woodson, S.A.; Chance, M.R.; Brenowitz, M. Time-resolved synchroton X-ray footprinting and its application to RNA folding. Methods Enzymol., 2000, 317, 353-368.
[2]
Xu, G.; Chance, M.R. Hydroxyl radical-mediated modification of proteins as probes for structural proteomics. Chem. Rev., 2007, 107, 3514-3543.
[3]
Bohon, J.; Jennings, L.D.; Phillips, C.; Licht, S.; Chance, M.R. Synchrotron protein footprinting supports substrate translocation by ClpA via ATP-induced movements of the D2 loop. Structure, 2008, 16, 1157-1165.
[4]
Deperalta, G.; Alvarez, M.; Bechtel, C.; Dong, K.; McDonald, R.; Ling, V. Structural analysis of a therapeutic monoclonal antibody dimer by hydroxyl radical footprinting. MAbs, 2013, 7, 86-101.
[5]
Gupta, S.; Bavro, V.; D’Mello, R.; Tucker, S.J.; Vénien-Bryan, C.; Chance, M.R. Conformational changes during the gating of a potassium channel revealed by structural mass spectrometry. Structure, 2010, 18, 839-846.
[6]
Kamal, J.K.A.; Chance, M.R. Modeling of protein binary complexes using structural mass spectrometry data. Protein Sci., 2008, 17, 79-94.
[7]
Huang, W.; Ravikumar, K.M.; Chance, M.R.; Yang, S. Quantitative mapping of protein structure by hydroxyl radical footprinting-mediated structural mass spectrometry: A protection factor analysis. Biophys. J., 2015, 108(1), 107-115.
[8]
Xie, B.; Sood, A.; Woods, R.J.; Sharp, J. Quantitative protein topography measurements by high resolution hydroxyl radical protein footprinting enable accurate molecular model selection. Sci. Rep., 2017, 7, 4552.
[9]
Orban, T.; Jastrzebska, B.; Gupta, S.; Wang, B.; Miyagi, M.; Chance, M.R.; Palczewski, K. Conformational dynamics of activation for the pentameric complex of dimeric G protein-coupled receptor and heterotrimeric G protein. Structure, 2012, 20, 826-840.
[10]
Leverenz, R.L.; Sutter, M.; Wilson, A.; Gupta, S.; Thurotte, A.; Bourcier de Carbon, C.; Petzold, C.J.; Ralston, C.; Perreau, F.; Kirilovsky, D.; Kerfeld, C.A.A. 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection. Science, 2015, 348, 1463-1466.
[11]
Sclavi, B.; Woodson, S.; Sullivan, M.; Chance, M.R.; Brenowitz, M. Time-resolved Synchrotron X-ray “Footprinting”, a new approach to the study of nucleic acid structure and function: Application to protein-DNA interactions and RNA folding. J. Mol. Biol., 1997, 266, 144-159.
[12]
Adilakshmi, T.; Bellur, D.T.; Woodson, S.A. Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly. Nature, 2008, 455, 1268-1272.
[13]
Gupta, S.; D’Mello, R.; Chance, M.R. Structure and dynamics of protein waters revealed by radiolysis and mass spectrometry. Proc. Natl. Acad. Sci. USA, 2012, 109, 14882-14887.
[14]
Angel, T.E.; Gupta, S.; Jastrzebska, B.; Palczewski, K.; Chance, M.R. Structural waters define a functional channel mediating activation of the GPCR, rhodopsin. Proc. Natl. Acad. Sci. USA, 2009, 106, 14367-14372.
[15]
Adilakshmi, T.; Lease, R.; Woodson, S.A. Hydroxyl radical footprinting in vivo: Mapping macromolecular structures with synchrotron radiation. Nucleic Acids Res., 2006, 34(8), e64.
[16]
Soper, S.F.C.; Dator, R.P.; Limbach, P.A.; Woodson, S.A. In Vivo X-Ray footprinting of Pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates. Mol. Cell, 2013, 52, 506-516.
[17]
Bohon, J.; D’Mello, R.; Ralston, C.; Gupta, S.; Chance, M.R. Synchrotron X-ray footprinting on tour. J. Synchrotron Radiat., 2014, 21, 24-31.
[18]
Sclavi, B.; Sullivan, M.; Chance, M.R.; Brenowitz, M.; Woodson, S. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting. Science, 1998, 279, 1940-1943.
[19]
Maleknia, S.D.; Brenowitz, M.; Chance, M.R. Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry. Anal. Chem., 1999, 71, 3965-3973.
[20]
Kiselar, J.; Janmey, P.A.; Almo, S.C.; Chance, M.R. Visualizing the Ca2+-dependent activation of gelsolin by using synchrotron footprinting. Proc. Natl. Acad. Sci. USA, 2003, 100, 3942-3947.
[21]
Gupta, S.; Cheng, H.; Mollah, A.K.M.M.; Jamison, E.; Morris, S.; Chance, M.R.; Khrapunov, S.; Brenowitz, M. DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein. Biochemistry, 2007, 46, 9886-9898.
[22]
Gupta, S.; Mangel, W.; McGrath, W.J.; Perek, J.L.; Lee, D.W.; Takamoto, K.; Chance, M.R. DNA binding provides a molecular strap activating the adenovirus proteinase. Mol. Cell. Proteomics, 2004, 3(10), 950-959.
[23]
Gupta, S.; Sullivan, M.; Toomey, J.; Kiselar, J.; Chance, M.R. The Beamline X28C of the center for synchrotron biosciences: A national resource for biomolecular structure and dynamics experiments using synchrotron footprinting. J. Synchrotron Radiat., 2007, 14, 233-243.
[24]
Sullivan, M.; Rekhi, S.; Bohon, J.; Gupta, S.; Abel, D.; Toomey, J.; Chance, M.R. Installation and testing of a focusing mirror at beamline X28C for high flux x-ray radiolysis of biological macromolecules. Rev. Sci. Instrum., 2008, 79, 025101.
[25]
Gupta, S.; Chai, J.; Cheng, J.; D’Mello, R.; Chance, M.R.; Fu, D. Visualizing the kinetic power stroke that drives proton-coupled zinc(II) transport. Nature, 2014, 512, 101-104.
[26]
Jennings, L.D.; Bohon, J.; Chance, M.R.; Licht, S. The ClpP N-terminus coordinates substrate access with protease active site reactivity. Biochemistry, 2008, 47, 11031-11040.
[27]
Hulscher, R.M.; Bohon, J.; Rappé, M.; Gupta, S.; D’Mello, R.; Sullivan, M.; Ralston, C.Y.; Chance, M.R.; Woodson, S.A. Probing the structure of ribosome assembly intermediates in vivo using DMS and hydroxyl radical footprinting. Methods, 2016, 103, 49-56.
[28]
Gupta, S.; Celestre, R.; Petzold, C.J.; Chance, M.R.; Ralston, C. Development of a microsecond X-ray protein footprinting facility at the advanced light source. J. Synchrotron Radiat., 2014, 21, 690-699.
[29]
Bohon, J.; Sullivan, M.; Dvorak, J.; Abel, D.; Toomey, J.; Chance, M.R. Development of the XFP beamline for x-ray footprinting at NSLS-II. AIP Conf. Proc., 2016, 1741, 030005.
[30]
Zhou, T.; Ding, W.; Gaowei, M.; De Geronimo, G.; Bohon, J.; Smedley, J.; Muller, E. Pixelated transmission-mode diamond X-ray detector. J. Synchrotron Radiat., 2015, 22, 1396-1402.
21
2