Review Article

复合信号网络控制铜绿假单胞菌生物膜的动态分子变化

卷 26, 期 11, 2019

页: [1979 - 1993] 页: 15

弟呕挨: 10.2174/0929867325666180912110151

open access plus

摘要

环境对微生物产生强烈影响。 微生物适应不断变化的条件是由复杂网络调节的动态过程。 铜绿假单胞菌是一种生命威胁,多功能的机会性和多重耐药性病原体,为研究环境变化的适应机制提供了一种模型。 铜绿假单胞菌形成生物膜和改变环境变化毒力的能力由各种机制协调,包括双组分系统(TCS)和参与群体感应(QS)和c-di-GMP网络的二级信使( 二鸟苷酸环化酶系统,DGC)。 在这篇综述中,我们关注c-di-GMP在生物膜形成过程中的作用。 我们描述了由c-di-GMP调节的TCS和QS信号级联响应外部环境的变化。 我们提出了一个复杂的信号网络,在铜绿假单胞菌从自由生长到无柄生长模式的转变过程中动态变化。

关键词: 铜绿假单胞菌,生物膜,双组分系统,二鸟苷酸环化酶系统,群体感应信号通路,生物标志物。

[1]
Boucher, H.W.; Talbot, G.H.; Bradley, J.S.; Edwards, J.E.; Gilbert, D.; Rice, L.B.; Scheld, M.; Spellberg, B.; Bartlett, J. Bad Bugs, No Drugs: No ESKAPE! An update from the Infectious Diseases Society of America. Clin. Infect. Dis., 2009, 48(1), 1-12.
[2]
Hancock, R.E.W.; Speert, D.P. Antibiotic resistance in Pseudomonas aeruginosa: mechanisms and impact on treatment. Drug Resist. Updat., 2000, 3(4), 247-255.
[3]
Livermore, D.M. Radiolabelling of penicillin-binding proteins(PBPs) in intact Pseudomonas aeruginosa cells: Consequences of β-lactamase activity by pbp-5. J. Antimicrob. Chemother., 1987, 19(6), 733-742.
[4]
Nikaido, H. Molecular basis of bacterial outer membrane permeability revisited. Microbiol. Mol. Biol. Rev., 2003, 67(4), 593-656.
[5]
Livermore, D.M. Multiple mechanisms of antimicrobial resistance in Pseudomonas aeruginosa: Our worst nightmare? Clin. Infect. Dis., 2002, 34(5), 634-640.
[6]
Strateva, T.; Yordanov, D. Pseudomonas aeruginosa - A phenomenon of bacterial resistance. J. Med. Microbiol., 2009, 58(9), 1133-1148.
[7]
Lister, P.D.; Wolter, D.J.; Hanson, N.D. Antibacterial-resistant Pseudomonas aeruginosa: clinical impact and complex regulation of chromosomally encoded resistance mechanisms. Clin. Microbiol. Rev., 2009, 22(4), 582-610.
[8]
Lee, J-Y.; Na, I.Y.; Park, Y.K.; Ko, K.S. Genomic variations between colistin-susceptible and -resistant Pseudomonas aeruginosa clinical isolates and their effects on colistin resistance. J. Antimicrob. Chemother., 2014, 69(5), 1248-1256.
[9]
Olaitan, A.O.; Morand, S.; Rolain, J-M. Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria. Front. Microbiol., 2014, 5(NOV), 643.
[10]
El Amin, N.; Giske, C.G.; Jalal, S.; Keijser, B.; Kronvall, G.; Wretlind, B. Carbapenem resistance mechanisms in Pseudomonas aeruginosa: Alterations of porin OprD and efflux proteins do not fully explain resistance patterns observed in clinical isolates. APMIS, 2005, 113(3), 187-196.
[11]
Li, X-Z.; Plésiat, P.; Nikaido, H. The challenge of efflux-mediated antibiotic resistance in Gram-negative bacteria. Clin. Microbiol. Rev., 2015, 28(2), 337-418.
[12]
Potron, A.; Poirel, L.; Nordmann, P. Emerging broad-spectrum resistance in Pseudomonas aeruginosa and Acinetobacter baumannii: Mechanisms and epidemiology. Int. J. Antimicrob. Agents, 2015, 45(6), 568-585.
[13]
Empel, J.; Filczak, K.; Mrówka, A.; Hryniewicz, W.; Livermore, D.M.; Gniadkowski, M. Outbreak of Pseudomonas aeruginosa infections with PER-1 extended-spectrum β-lactamase in Warsaw, Poland: Further evidence for an international clonal complex. J. Clin. Microbiol., 2007, 45(9), 2829-2834.
[14]
Poole, K. Aminoglycoside resistance in Pseudomonas aeruginosa. Antimicrob. Agents Chemother., 2005, 49(2), 479-487.
[15]
Kos, V.N.; Déraspe, M.; McLaughlin, R.E.; Whiteaker, J.D.; Roy, P.H.; Alm, R.A.; Corbeil, J.; Gardner, H. The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility. Antimicrob. Agents Chemother., 2015, 59(1), 427-436.
[16]
Wolter, D.J.; Hanson, N.D.; Lister, P.D. AmpC and OprD are not involved in the mechanism of imipenem hypersusceptibility among Pseudomonas aeruginosa isolates overexpressing the mexCD-oprJ efflux pump. Antimicrob. Agents Chemother., 2005, 49(11), 4763-4766.
[17]
Henriques Normark, B.; Normark, S. Evolution and spread of antibiotic resistance. J. Intern. Med., 2002, 252(2), 91-106.
[18]
Trafny, E.A. Powstawanie biofilmu Pseudomonas aeruginosa i jego znaczenie w patogenezie zakazen przewleklych. Postepy Mikrobiol., 2000, 39(1), 55-71.
[19]
Wolcott, R.; Costerton, J.W.; Raoult, D.; Cutler, S.J. The polymicrobial nature of biofilm infection. Clin. Microbiol. Infect., 2013, 19(2), 107-112.
[20]
Kipnis, E.; Sawa, T.; Wiener-Kronish, J. Targeting mechanisms of Pseudomonas aeruginosa pathogenesis. Medecine et Maladies Infectieuses., 2006, 78-91.
[21]
Van Delden, C.; Iglewski, B.H. Cell-to-cell signaling and Pseudomonas aeruginosa infections. Emerg. Infect. Dis., 1998, 4(4), 551-560.
[22]
Lee, V.T.; Smith, R.S.; Tümmler, B.; Lory, S. Activities of Pseudomonas aeruginosa effectors secreted by the type III secretion system in vitro and during infection. Infect. Immun., 2005, 73(3), 1695-1705.
[23]
Visca, P.; Imperi, F.; Lamont, I.L. Pyoverdine siderophores: from biogenesis to biosignificance. Trends Microbiol., 2007, 15(1), 22-30.
[24]
Bixler, G.D.; Bhushan, B. Biofouling: Lessons from nature. Philos. Trans. R. Soc. A Math. Phys. Eng. Sci., 2012, 370(1967), 2381-2417.
[25]
Roberts, A.E.L.; Kragh, K.N.; Bjarnsholt, T.; Diggle, S.P. The limitations of in vitro experimentation in understanding biofilms and chronic infection. J. Mol. Biol., 2015, 427(23), 3646-3661.
[26]
Bjarnsholt, T.; Jensen, P.Ø.; Fiandaca, M.J.; Pedersen, J.; Hansen, C.R.; Andersen, C.B.; Pressler, T.; Givskov, M.; Høiby, N. Pseudomonas aeruginosa biofilms in the respiratory tract of cystic fibrosis patients. Pediatr. Pulmonol., 2009, 44(6), 547-558.
[27]
Kirisits, M.J.; Prost, L.; Starkey, M.; Parsek, M.R. Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilms. Appl. Environ. Microbiol., 2005, 71(8), 4809-4821.
[28]
Drenkard, E. Antimicrobial resistance of Pseudomonas aeruginosa biofilms. Microbes Infect., 2003, 5(13), 1213-1219.
[29]
Gillis, R.J.; White, K.G.; Choi, K-H.; Wagner, V.E.; Schweizer, H.P.; Iglewski, B.H. Molecular basis of azithromycin-resistant Pseudomonas aeruginosa biofilms. Antimicrob. Agents Chemother., 2005, 49(9), 3858-3867.
[30]
Prakash, B.; Veeregowda, B.M.; Krishnappa, G. Biofilms: A survival strategy of bacteria. Curr. Sci., 2003, 85(9), 1299-1307.
[31]
Spoering, A.L.; Lewis, K. Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J. Bacteriol., 2001, 183(23), 6746-6751.
[32]
Lee, J.; Zhang, L. The hierarchy quorum sensing network in Pseudomonas aeruginosa. Protein Cell, 2014, 6(1), 26-41.
[33]
Alhazmi, A. Pseudomonas aeruginosa - Pathogenesis and Pathogenic Mechanisms. Int. J. Biol., 2015, 7(2)
[34]
Moradali, M.F.; Ghods, S.; Rehm, B.H.A. Pseudomonas aeruginosa Lifestyle: A Paradigm for Adaptation, Survival, and Persistence. Front. Cell. Infect. Microbiol., 2017, 7(39)
[35]
Sauer, K.; Camper, A.K.; Ehrlich, G.D.; Costerton, J.W.; Davies, D.G. Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J. Bacteriol., 2002, 184(4), 1140-1154.
[36]
Adamo, R.; Sokol, S.; Soong, G.; Gomez, M.I.; Prince, A. Pseudomonas aeruginosa flagella activate airway epithelial cells through asialoGM1 and toll-like receptor 2 as well as toll-like receptor 5. Am. J. Respir. Cell Mol. Biol., 2004, 30(5), 627-634.
[37]
Arora, S.K.; Ritchings, B.W.; Almira, E.C.; Lory, S.; Ramphal, R. The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion. Infect. Immun., 1998, 66(3), 1000-1007.
[38]
Mattick, J.S. Type IV pili and twitching motility. Annu. Rev. Microbiol., 2002, 56(1), 289-314.
[39]
Semmler, A.B.T.; Whitchurch, C.B.; Mattick, J.S. A re-examination of twitching motility in Pseudomonas aeruginosa. Microbiology, 1999, 145(10), 2863-2873.
[40]
Rocchetta, H.L.; Burrows, L.L.; Lam, J.S. Genetics of O-antigen biosynthesis in Pseudomonas aeruginosa. Microbiol. Mol. Biol. Rev., 1999, 63(3), 523-553.
[41]
Makin, S.A.; Beveridge, T.J. The influence of A-band and B-band lipopolysaccharide on the surface characteristics and adhesion of Pseudomonas aeruginosa to surfaces. Microbiology, 1996, 142(2), 299-307.
[42]
Hall, S.; McDermott, C.; Anoopkumar-Dukie, S.; McFarland, A.J.; Forbes, A.; Perkins, A.V.; Davey, A.K.; Chess-Williams, R.; Kiefel, M.J.; Arora, D.; Grant, G.D. Cellular effects of pyocyanin, a secreted virulence factor of Pseudomonas aeruginosa. Toxins (Basel), 2016, 8(8), 1-14.
[43]
Schalk, I.J.; Guillon, L. Pyoverdine biosynthesis and secretion in Pseudomonas aeruginosa: Implications for metal homeostasis. Environ. Microbiol., 2013, 15(6), 1661-1673.
[44]
Musk, D.J.; Banko, D.A.; Hergenrother, P.J. Iron salts perturb biofilm formation and disrupt existing biofilms of Pseudomonas aeruginosa. Chem. Biol., 2005, 12(7), 789-796.
[45]
Lee, V.T.; Schneewind, O. Protein secretion and the pathogenesis of bacterial infections. Genes Dev., 2001, 15(14), 1725-1752.
[46]
Korotkov, K.V.; Sandkvist, M.; Hol, W.G.J. The type II secretion system: biogenesis, molecular architecture and mechanism. Nat. Rev. Microbiol., 2012, 10(5), 336-351.
[47]
Flemming, H.C.; Wingender, J. The biofilm matrix. Nat. Rev. Microbiol., 2010, 8(9), 623-633.
[48]
Jain, S.; Ohman, D.E. Role of an alginate lyase for alginate transport in mucoid Pseudomonas aeruginosa. Infect. Immun., 2005, 73(10), 6429-6436.
[49]
Mikkelsen, H.; Sivaneson, M.; Filloux, A. Key two-component regulatory systems that control biofilm formation in Pseudomonas aeruginosa. Environ. Microbiol., 2011, 13(7), 1666-1681.
[50]
Xu, K.D.; Stewart, P.S.; Xia, F.; Huang, C.T.; McFeters, G.A. Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability. Appl. Environ. Microbiol., 1998, 64(10), 4035-4039.
[51]
Zhang, L.; Hinz, A.J.; Nadeau, J.P.; Mah, T.F. Pseudomonas aeruginosa tssC1 links type VI secretion and biofilm-specific antibiotic resistance. J. Bacteriol., 2011, 193(19), 5510-5513.
[52]
Alkawash, M.A.; Soothill, J.S.; Schiller, N.L. Alginate lyase enhances antibiotic killing of mucoid Pseudomonas aeruginosa in biofilms. APMIS, 2006, 114(2), 131-138.
[53]
Johnson, C.H.; Ivanisevic, J.; Siuzdak, G. Metabolomics: beyond biomarkers and towards mechanisms. Nat. Rev. Mol. Cell Biol., 2016, 17(7), 451-459.
[54]
Smith, D.; Španěl, P.; Gilchrist, F.J.; Lenney, W. Hydrogen cyanide, a volatile biomarker of Pseudomonas aeruginosa infection. J. Breath Res., 2013, 7(4)044001
[55]
Gilchrist, F.J.; Sims, H.; Alcock, A.; Belcher, J.; Jones, A.M.; Smith, D.; Španĕl, P.; Webb, A.K.; Lenney, W. Quantification of hydrogen cyanide and 2-aminoacetophenone in the headspace of Pseudomonas aeruginosa cultured under biofilm and planktonic conditions. Anal. Methods, 2012, 4(11), 3661.
[56]
Gilchrist, F.J.; Španěl, P.; Smith, D.; Lenney, W. The in vitro identification and quantification of volatile biomarkers released by cystic fibrosis pathogens. Anal. Methods, 2015, 7(3), 818-824.
[57]
Chua, S.L.; Hultqvist, L.D.; Yuan, M.; Rybtke, M.; Nielsen, T.E.; Givskov, M.; Tolker-Nielsen, T.; Yang, L. In vitro and in vivo generation and characterization of Pseudomonas aeruginosa biofilm-dispersed cells via c-di-GMP manipulation. Nat. Protoc., 2015, 10(8), 1165-1180.
[58]
Lambert, P.A. Mechanisms of antibiotic resistance in Pseudomonas aeruginosa. J. R. Soc. Med., 2002, 95Suppl 4. (Suppl 41), 22-26.
[59]
Stover, C.K.; Pham, X.Q.; Erwin, A.L.; Mizoguchi, S.D.; Warrener, P.; Hickey, M.J.; Brinkman, F.S.L.; Hufnagle, W.O.; Kowalik, D.J.; Olson, M.V. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature, 2000, 406(6799), 959-964.
[60]
Balasubramanian, D.; Schneper, L.; Kumari, H.; Mathee, K. A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic Acids Res., 2013, 41(1), 1-20.
[61]
Francis, V.I.; Stevenson, E.C.; Porter, S.L. Two-component systems required for virulence in Pseudomonas aeruginosa. FEMS Microbiol. Lett., 2017, 364(11)
[http://dx.doi.org/10.1093/femsle/fnx104]
[62]
Petrova, O.E.; Schurr, J.R.; Schurr, M.J.; Sauer, K. The novel Pseudomonas aeruginosa two-component regulator BfmR controls bacteriophage-mediated lysis and DNA release during biofilm development through PhdA. Mol. Microbiol., 2011, 81(3), 767-783.
[63]
Stock, A.M.; Robinson, V.L.; Goudreau, P.N. Two-component signal transduction. Annu. Rev. Biochem., 2000, 69, 183-215.
[64]
Willett, J.W.; Crosson, S. Atypical modes of bacterial histidine kinase signaling. Mol. Microbiol., 2017, 103(2), 197-202.
[65]
Rodrigue, A.; Quentin, Y.; Lazdunski, A.; Méjean, V.; Foglino, M. Two-component systems in Pseudomonas aeruginosa: why so many? Trends Microbiol., 2000, 8(11), 498-504.
[66]
Vallet, I.; Olson, J.W.; Lory, S.; Lazdunski, A.; Filloux, A. The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters(cup) and their involvement in biofilm formation. Proc. Natl. Acad. Sci. USA, 2001, 98(12), 6911-6916.
[67]
Sivaneson, M.; Mikkelsen, H.; Ventre, I.; Bordi, C.; Filloux, A. Two-component regulatory systems in Pseudomonas aeruginosa: An intricate network mediating fimbrial and efflux pump gene expression. Mol. Microbiol., 2011, 79(5), 1353-1366.
[68]
Mikkelsen, H.; Ball, G.; Giraud, C.; Filloux, A. Expression of Pseudomonas aeruginosa cupD fimbrial genes is antagonistically controlled by RcsB and the EAL-containing PvrR response regulators. PLoS One, 2009, 4(6)e6018
[69]
Kulasekara, H.D.; Ventre, I.; Kulasekara, B.R.; Lazdunski, A.; Filloux, A.; Lory, S. A novel two-component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes. Mol. Microbiol., 2005, 55(2), 368-380.
[70]
Gallagher, L.A.; Manoil, C. Pseudomonas aeruginosa PAO1 kills Caenorhabditis elegans by cyanide poisoning. J. Bacteriol., 2001, 183(21), 6207-6214.
[71]
O’Toole, G.A.; Kolter, R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol. Microbiol., 1998, 30(2), 295-304.
[72]
Hobbs, M.; Collie, E.S.R.; Free, P.D.; Livingston, S.P.; Mattick, J.S. PilS and PilR, a two‐component transcriptional regulatory system controlling expression of type 4 fimbriae in Pseudomonas aeruginosa. Mol. Microbiol., 1993, 7(5), 669-682.
[73]
Whitchurch, C.B.; Alm, R.A.; Mattick, J.S. The alginate regulator AlgR and an associated sensor FimS are required for twitching motility in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA, 1996, 93(18), 9839-9843.
[74]
Borlee, B.R.; Goldman, A.D.; Murakami, K.; Samudrala, R.; Wozniak, D.J.; Parsek, M.R. Pseudomonas aeruginosa uses a cyclic-di-GMP-regulated adhesin to reinforce the biofilm extracellular matrix. Mol. Microbiol., 2010, 75(4), 827-842.
[75]
Ma, S.; Wozniak, D.J.; Ohman, D.E. Identification of the histidine protein kinase KinB in Pseudomonas aeruginosa and its phosphorylation of the alginate regulator AlgB. J. Biol. Chem., 1997, 272(29), 17952-17960.
[76]
Moscoso, J.A.; Mikkelsen, H.; Heeb, S.; Williams, P.; Filloux, A. The Pseudomonas aeruginosa sensor RetS switches Type III and Type VI secretion via c-di-GMP signalling. Environ. Microbiol., 2011, 13(12), 3128-3138.
[77]
Goodman, A.L.; Merighi, M.; Hyodo, M.; Ventre, I.; Filloux, A.; Lory, S. Direct interaction between sensor kinase proteins mediates acute and chronic disease phenotypes in a bacterial pathogen. Genes Dev., 2009, 23(2), 249-259.
[78]
Ventre, I.; Goodman, A.L.; Vallet-Gely, I.; Vasseur, P.; Soscia, C.; Molin, S.; Bleves, S.; Lazdunski, A.; Lory, S.; Filloux, A. Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes. Proc. Natl. Acad. Sci. USA, 2006, 103(1), 171-176.
[79]
Valentini, M.; Filloux, A. Biofilms and Cyclic di-GMP(c-di-GMP) signaling: Lessons from Pseudomonas aeruginosa and other bacteria. J. Biol. Chem., 2016, 291(24), 12547-12555.
[80]
Petrova, O.E.; Sauer, K. SagS contributes to the motile-sessile switch and acts in concert with BfiSR to enable Pseudomonas aeruginosa biofilm formation. J. Bacteriol., 2011, 193(23), 6614-6628.
[81]
Jenal, U.; Malone, J. Mechanisms of cyclic-di-GMP signaling in bacteria. Annu. Rev. Genet., 2006, 40(1), 385-407.
[82]
Hay, I.D.; Remminghorst, U.; Rehm, B.H.A. MucR, a novel membrane-associated regulator of alginate biosynthesis in Pseudomonas aeruginosa. Appl. Environ. Microbiol., 2009, 75(4), 1110-1120.
[83]
Chou, S.H.; Galperin, M.Y. Diversity of cyclic di-GMP-binding proteins and mechanisms. J. Bacteriol., 2016, 198(1), 32-46.
[84]
Hengge, R. Cyclic-di-GMP reaches out into the bacterial RNA world. Sci. Signal., 2010, 3(149), pe44.
[85]
Li, Z.; Chen, J.H.; Hao, Y.; Nair, S.K. Structures of the PelD cyclic diguanylate effector involved in pellicle formation in Pseudomonas aeruginosa PAO1. J. Biol. Chem., 2012, 287(36), 30191-30204.
[86]
Whitney, J.C.; Colvin, K.M.; Marmont, L.S.; Robinson, H.; Parsek, M.R.; Howell, P.L. Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa. J. Biol. Chem., 2012, 287(28), 23582-23593.
[87]
Romling, U.; Galperin, M.Y.; Gomelsky, M. Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger. Microbiol. Mol. Biol. Rev., 2013, 77(1), 1-52.
[88]
Hengge, R. Principles of c-di-GMP signalling in bacteria. Nat. Rev. Microbiol., 2009, 7(4), 263-273.
[89]
Huangyutitham, V.; Güvener, Z.T.; Harwood, C.S. Subcellular clustering of the phosphorylated WspR response regulator protein stimulates its diguanylate cyclase activity. MBio, 2013, 4(3), e00242-e13.
[90]
O’Toole, G.A. How Pseudomonas aeruginosa regulates surface behaviors at surfaces, these bacteria either form biofilms or swarm, a regulated behavior with important consequences for pathogenesis. Microbe, 2008, 3(2), 65-71.
[91]
Moscoso, J.A.; Jaeger, T.; Valentini, M.; Hui, K.; Jenal, U.; Filloux, A. The diguanylate cyclase SadC is a central player in Gac/Rsm-mediated biofilm formation in Pseudomonas aeruginosa. J. Bacteriol., 2014, 196(23), 4081-4088.
[92]
Mowat, E.; Paterson, S.; Fothergill, J.L.; Wright, E.A.; Ledson, M.J.; Walshaw, M.J.; Brockhurst, M.A.; Winstanley, C. Pseudomonas aeruginosa population diversity and turnover in cystic fibrosis chronic infections. Am. J. Respir. Crit. Care Med., 2011, 183(12), 1674-1679.
[93]
Malone, J.G.; Jaeger, T.; Spangler, C.; Ritz, D.; Spang, A.; Arrieumerlou, C.; Kaever, V.; Landmann, R.; Jenal, U. YfiBNR mediates cyclic di-GMP dependent small colony variant formation and persistence in Pseudomonas aeruginosa. PLoS Pathog., 2010, 6(3)e1000804
[94]
Drenkard, E.; Ausubel, F.M. Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature, 2002, 416(6882), 740-743.
[95]
Hickman, J.W.; Tifrea, D.F.; Harwood, C.S. A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels. Proc. Natl. Acad. Sci. USA, 2005, 102(40), 14422-14427.
[96]
Merighi, M.; Lee, V.T.; Hyodo, M.; Hayakawa, Y.; Lory, S. The second messenger bis-(3′-5′)-cyclic-GMP and its PilZ domain-containing receptor Alg44 are required for alginate biosynthesis in Pseudomonas aeruginosa. Mol. Microbiol., 2007, 65(4), 876-895.
[97]
Baraquet, C.; Harwood, C.S. Cyclic diguanosine monophosphate represses bacterial flagella synthesis by interacting with the Walker A motif of the enhancer-binding protein FleQ. Proc. Natl. Acad. Sci. USA, 2013, 110(46), 18478-18483.
[98]
Ramelot, T.A.; Yee, A.; Cort, J.R.; Semesi, A.; Arrowsmith, C.H.; Kennedy, M.A. NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein. Proteins Struct. Funct. Bioinforma., 2006, 66(2), 266-271.
[99]
Chambers, J.R.; Liao, J.; Schurr, M.J.; Sauer, K. BrlR from Pseudomonas aeruginosa is a c-di-GMP-responsive transcription factor. Mol. Microbiol., 2014, 92(3), 471-487.
[100]
Imada, K.; Minamino, T.; Tahara, A.; Namba, K. Structural similarity between the flagellar type III ATPase FliI and F1-ATPase subunits. Proc. Natl. Acad. Sci. USA, 2007, 104(2), 485-490.
[101]
Lin, C.T.; Huang, Y.J.; Chu, P.H.; Hsu, J.L.; Huang, C.H.; Peng, H.L. Identification of an HptB-mediated multi-step phosphorelay in Pseudomonas aeruginosa PAO1. Res. Microbiol., 2006, 157(2), 169-175.
[102]
Mern, D.S.; Ha, S.W.; Khodaverdi, V.; Gliese, N.; Gorisch, H. A complex regulatory network controls aerobic ethanol oxidation in Pseudomonas aeruginosa: indication of four levels of sensor kinases and response regulators. Microbiology, 2010, 156(5), 1505-1516.
[103]
Li, K.; Yang, G.; Debru, A.B.; Li, P.; Zong, L.; Li, P.; Xu, T.; Wu, W.; Jin, S.; Bao, Q. SuhB regulates the motile-sessile switch in Pseudomonas aeruginosa through the Gac/Rsm pathway and c-di-GMP signaling. Front. Microbiol., 2017, 8, 1045.
[104]
Shi, J.; Jin, Y.; Bian, T.; Li, K.; Sun, Z.; Cheng, Z.; Jin, S.; Wu, W. SuhB is a novel ribosome associated protein that regulates expression of MexXY by modulating ribosome stalling in Pseudomonas aeruginosa. Mol. Microbiol., 2015, 98(2), 370-383.
[105]
Whitchurch, C.B.; Tolker-Nielsen, T.; Ragas, P.C.; Mattick, J.S. Extracellular DNA required for bacterial biofilm formation. Science, 2002, 295(5559), 1487.
[106]
Allesen-Holm, M.; Barken, K.B.; Yang, L.; Klausen, M.; Webb, J.S.; Kjelleberg, S.; Molin, S.; Givskov, M.; Tolker-Nielsen, T. A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms. Mol. Microbiol., 2006, 59(4), 1114-1128.
[107]
Barken, K.B.; Pamp, S.J.; Yang, L.; Gjermansen, M.; Bertrand, J.J.; Klausen, M.; Givskov, M.; Whitchurch, C.B.; Engel, J.N.; Tolker-Nielsen, T. Roles of type IV pili, flagellum-mediated motility and extracellular DNA in the formation of mature multicellular structures in Pseudomonas aeruginosa biofilms. Environ. Microbiol., 2008, 10(9), 2331-2343.
[108]
Mulcahy, H.; Charron-Mazenod, L.; Lewenza, S. Extracellular DNA chelates cations and induces antibiotic resistance in Pseudomonas aeruginosa biofilms. PLoS Pathog., 2008, 4(11)e1000213
[109]
Rice, S.A.; Tan, C.H.; Mikkelsen, P.J.; Kung, V.; Woo, J.; Tay, M.; Hauser, A.; McDougald, D.; Webb, J.S.; Kjelleberg, S. The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage. ISME J., 2009, 3(3), 271-282.
[110]
Zegans, M.E.; Wagner, J.C.; Cady, K.C.; Murphy, D.M.; Hammond, J.H.; O’Toole, G.A. Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J. Bacteriol., 2009, 91(1), 210-219.
[111]
Webb, J.S.; Thompson, L.S.; James, S.; Charlton, T.; Tolker-Nielsen, T.; Koch, B.; Givskov, M.; Kjelleberg, S. Cell death in Pseudomonas aeruginosa biofilm development. J. Bacteriol., 2003, 185(15), 4585-4592.
[112]
Webb, J.S.; Lau, M.; Kjelleberg, S. Bacteriophage and phenotypic variation in Pseudomonas aeruginosa biofilm development. J. Bacteriol., 2004, 186(23), 8066-8073.
[113]
Ryan, R.P.; Fouhy, Y.; Garcia, B.F.; Watt, S.A.; Niehaus, K.; Yang, L.; Tolker-Nielsen, T.; Dow, J.M. Interspecies signalling via the Stenotrophomonas maltophilia diffusible signal factor influences biofilm formation and polymyxin tolerance in Pseudomonas aeruginosa. Mol. Microbiol., 2008, 68(1), 75-86.
[114]
Tang, J-L.; Liu, Y-N.; Barber, C.E.; Dow, J.M.; Wootton, J.C.; Daniels, M.J. Genetic and molecular analysis of a cluster of rpf genes involved in positive regulation of synthesis of extracellular enzymes and polysaccharide in Xanthomonas campestris pathovar campestris. MGG Mol. Gen. Genet., 1991, 226(3), 409-417.
[115]
Barber, C.E.; Tang, J.L.; Feng, J.X.; Pan, M.Q.; Wilson, T.J.G.; Slater, H.; Dow, J.M.; Williams, P.; Daniels, M.J. A novel regulatory system required for pathogenicity of Xanthomonas campestris is mediated by a small diffusible signal molecule. Mol. Microbiol., 1997, 24(3), 555-566.
[116]
Boon, C.; Deng, Y.; Wang, L-H.; He, Y.; Xu, J-L.; Fan, Y.; Pan, S.Q.; Zhang, L-H. A novel DSF-like signal from Burkholderia cenocepacia interferes with Candida albicans morphological transition. ISME J., 2008, 2(1), 27-36.
[117]
Davies, D.G.; Marques, C.N.H. A fatty acid messenger is responsible for inducing dispersion in microbial biofilms. J. Bacteriol., 2009, 191(5), 1393-1403.
[118]
Slater, H.; Alvarez-Morales, A.; Barber, C.E.; Daniels, M.J.; Dow, J.M. A two-component system involving an HD-GYP domain protein links cell-cell signalling to pathogenicity gene expression in Xanthomonas campestris. Mol. Microbiol., 2002, 38(5), 986-1003.
[119]
Amari, D.T.; Marques, C.N.H.; Davies, D.G. The putative enoyl-coenzyme A hydratase DspI is required for production of the Pseudomonas aeruginosa biofilm dispersion autoinducer cis-2-decenoic acid. J. Bacteriol., 2013, 195(20), 4600-4610.
[120]
Cohen, D.; Mechold, U.; Nevenzal, H.; Yarmiyhu, Y.; Randall, T.E.; Bay, D.C.; Rich, J.D.; Parsek, M.R.; Kaever, V. … Banin, E. Oligoribonuclease is a central feature of cyclic diguanylate signaling in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA, 2015, 112(36), 11359-11364.
[121]
An, S.; Ryan, R.P. Combating chronic bacterial infections by manipulating cyclic nucleotide-regulated biofilm formation. Future Med. Chem., 2016, 8(9), 949-961.
[122]
Ryan, R.P. Cyclic di-GMP signalling and the regulation of bacterial virulence. Microbiology, 2013, 159(7), 1286-1297.
[123]
Ryan, R.P.; An, S.; Allan, J.H.; McCarthy, Y.; Dow, J.M. The DSF family of cell-cell signals: An expanding class of bacterial virulence regulators. PLoS Pathog., 2015, 11(7)e1004986
[124]
Coggan, K.A.; Wolfgang, M.C. Global regulatory pathways and cross-talk control Pseudomonas aeruginosa environmental lifestyle and virulence phenotype. Curr. Issues Mol. Biol., 2012, 14(2), 47-70.
[125]
Venturi, V. Regulation of quorum sensing in Pseudomonas. FEMS Microbiol. Rev., 2006, 30(2), 274-291.
[126]
Fuqua, W.C.; Winans, S.C.; Greenberg, E.P. Quorum sensing in bacteria: The LuxR-LuxI family of cell density- responsive transcriptional regulators. J. Bacteriol., 1994, 176(2), 269-275.
[127]
Schuster, M.; Greenberg, E.P. Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon. BMC Genomics, 2007, 8, 287.
[128]
Schuster, M.; Lostroh, C.P.; Ogi, T.; Greenberg, E.P. Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: A transcriptome analysis. J. Bacteriol., 2003, 185(7), 2066-2079.
[129]
Schuster, M.; Greenberg, E.P. A network of networks: Quorum-sensing gene regulation in Pseudomonas aeruginosa. Int. J. Med. Microbiol., 2006, 296(2-3), 73-81.
[130]
Wilder, C.N.; Diggle, S.P.; Schuster, M. Cooperation and cheating in Pseudomonas aeruginosa: the roles of the Las, Rhl and Pqs quorum-sensing systems. ISME J., 2011, 5, 1332-1343.
[131]
Davies, D.G.; Parsek, M.R.; Pearson, J.P.; Iglewski, B.H.; Costerton, J.W.; Greenberg, E.P. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science, 1998, 280(5361), 295-298.
[132]
Lee, K.; Yoon, S.S. Pseudomonas aeruginosa biofilm, a programmed bacterial life for fitness. J. Microbiol. Biotechnol., 2017, 27(6), 1053-1064.
[133]
Juhas, M.; Eberl, L.; Tümmler, B. Quorum sensing: The power of cooperation in the world of Pseudomonas. Environ. Microbiol., 2005, •••, 459-471.
[134]
Patriquin, G.M.; Banin, E.; Gilmour, C.; Tuchman, R.; Greenberg, E.P.; Poole, K. Influence of quorum sensing and iron on twitching motility and biofilm formation in Pseudomonas aeruginosa. J. Bacteriol., 2008, 190(2), 662-671.
[135]
Bjarnsholt, T.; Jensen, P.Ø.; Jakobsen, T.H.; Phipps, R.; Nielsen, A.K.; Rybtke, M.T.; Tolker-Nielsen, T.; Givskov, M.; Høiby, N.; Ciofu, O. Scandinavian Cystic Fibrosis Study Consortium. Quorum sensing and virulence of Pseudomonas aeruginosa during lung infection of cystic fibrosis patients. PLoS One, 2010, 5(4)e10115
[136]
Dusane, D.H.; Zinjarde, S.S.; Venugopalan, V.P.; McLean, R.J.C.; Weber, M.M.; Rahman, P.K.S.M. Quorum sensing: Implications on rhamnolipid biosurfactant production. Biotechnol. Genet. Eng. Rev., 2010, 27(1), 159-184.
[137]
Rampioni, G.; Schuster, M.; Greenberg, E.P.; Bertani, I.; Grasso, M.; Venturi, V.; Zennaro, E.; Leoni, L. RsaL provides quorum sensing homeostasis and functions as a global regulator of gene expression in Pseudomonas aeruginosa. Mol. Microbiol., 2007, 66(6), 1557-1565.
[138]
Ledgham, F.; Ventre, I.; Soscia, C.; Foglino, M.; Sturgis, J.N.; Lazdunski, A. Interactions of the quorum sensing regulator QscR: Interaction with itself and the other regulators of Pseudomonas aeruginosa LasR and RhlR. Mol. Microbiol., 2003, 48(1), 199-210.
[139]
Li, L.L.; Malone, J.E.; Iglewski, B.H. Regulation of the Pseudomonas aeruginosa quorum-sensing regulator VqsR. J. Bacteriol., 2007, 189(12), 4367-4374.
[140]
Seet, Q.; Zhang, L.H. Anti-activator QslA defines the quorum sensing threshold and response in Pseudomonas aeruginosa. Mol. Microbiol., 2011, 80(4), 951-965.
[141]
Gallagher, L.A.; McKnight, S.L.; Kuznetsova, M.S.; Pesci, E.C.; Manoil, C. Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa. J. Bacteriol., 2002, 184(23), 6472-6480.
[142]
Schertzer, J.W.; Boulette, M.L.; Whiteley, M. More than a signal: non-signaling properties of quorum sensing molecules. Trends Microbiol., 2009, 17(5), 189-195.
[143]
Camilli, A.; Bassler, B.L. Bacterial small-molecule signaling pathways. Science, 2006, 311(5764), 1113-1116.
[144]
Yang, L.; Nilsson, M.; Gjermansen, M.; Givskov, M.; Tolker-Nielsen, T. Pyoverdine and PQS mediated subpopulation interactions involved in Pseudomonas aeruginosa biofilm formation. Mol. Microbiol., 2009, 74(6), 1380-1392.
[145]
Pamp, S.J.; Tolker-Nielsen, T. Multiple roles of biosurfactants in structural biofilm development by Pseudomonas aeruginosa. J. Bacteriol., 2007, 189(6), 2531-2539.
[146]
Chugani, S.A.; Whiteley, M.; Lee, K.M.; D’Argenio, D.; Manoil, C.; Greenberg, E.P. QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA, 2001, 98(5), 2752-2757.
[147]
Lee, J.; Wu, J.; Deng, Y.; Wang, J.; Wang, C.; Wang, J.; Chang, C.; Dong, Y.; Williams, P.; Zhang, L.H. A cell-cell communication signal integrates quorum sensing and stress response. Nat. Chem. Biol., 2013, 9(5), 339-343.
[148]
Lee, D.G.; Urbach, J.M.; Wu, G.; Liberati, N.T.; Feinbaum, R.L.; Miyata, S.; Diggins, L.T.; He, J.; Saucier, M.; Deziel, E.; Friedman, L.; Li, L.; Montgomery, K.; Kucherlapati, R.; Rahme, L.G. Ausubel, F.M. Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol., 2006, 7(10), r90.
[149]
Lequette, Y.; Lee, J.H.; Ledgham, F.; Lazdunski, A.; Greenberg, E.P. A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit. J. Bacteriol., 2006, 188(9), 3365-3370.
[150]
Jenul, C.; Sieber, S.; Daeppen, C.; Mathew, A.; Lardi, M.; Pessi, G.; Hoepfner, D.; Neuburger, M.; Linden, A.; Gademann, K.; Eberl, L. Biosynthesis of fragin is controlled by a novel quorum sensing signal. Nat. Commun., 2018, 9(1), 1297.
[151]
Erez, Z.; Steinberger-Levy, I.; Shamir, M.; Doron, S.; Stokar-Avihail, A.; Peleg, Y.; Melamed, S.; Leavitt, A.; Savidor, A.; Albeck, S.; Amitai, G.; Sorek, R. Communication between viruses guides lysis-lysogeny decisions. Nature, 2017, 541(7638), 488-493.
[152]
Dasgupta, N.; Ferrell, E.P.; Kanack, K.J.; West, S.E.H.; Ramphal, R. FleQ, the gene encoding the major flagellar regulator of Pseudomonas aeruginosa, is sigma70 dependent and is downregulated by Vfr, a homolog of Escherichia coli cyclic AMP receptor protein. J. Bacteriol., 2002, 184(19), 5240-5250.
[153]
Martin, D.W.; Schurr, M.J.; Yu, H.; Deretic, V. Analysis of promoters controlled by the putative sigma factor AlgU regulating conversion to mucoidy in Pseudomonas aeruginosa: Relationship to sigma E and stress response. J. Bacteriol., 1994, 176(21), 6688-6696.
[154]
Malone, J.G.; Williams, R.; Christen, M.; Jenal, U.; Spiers, A.J.; Rainey, P.B. The structure-function relationship of WspR, a Pseudomonas fluorescens response regulator with a GGDEF output domain. Microbiology, 2007, 153(4), 980-994.
[155]
Ueda, A.; Wood, T.K. Connecting quorum sensing, c-di-GMP, pel polysaccharide, and biofilm formation in Pseudomonas aeruginosa through tyrosine phosphatase TpbA(PA3885). PLoS Pathog., 2009, 5(6)e1000483
[156]
Dieppois, G.; Ducret, V.; Caille, O.; Perron, K. The transcriptional regulator CzcR modulates antibiotic resistance and quorum sensing in Pseudomonas aeruginosa. PLoS One, 2012, 7(5), 1-26.
[157]
O’Callaghan, J.; Reen, F.J.; Adams, C.; O’Gara, F. Low oxygen induces the type III secretion system in Pseudomonas aeruginosa via modulation of the small RNAs rsmZ and rsmY. Microbiology, 2011, 157(12), 3417-3428.
[158]
Williams, P.; Cámara, M. Quorum sensing and environmental adaptation in Pseudomonas aeruginosa: a tale of regulatory networks and multifunctional signal molecules. Curr. Opin. Microbiol., 2009, 12(2), 182-191.
[159]
Gupta, K.; Marques, C.N.H.; Petrova, O.E.; Sauer, K. Antimicrobial tolerance of pseudomonas aeruginosa biofilms is activated during an early developmental stage and requires the two-component hybrid sagS. J. Bacteriol., 2013, 195(21), 4975-4987.

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