Generic placeholder image

Current Chinese Chemistry

Editor-in-Chief

ISSN (Print): 2666-0016
ISSN (Online): 2666-0008

Short Communication

Pharmacophore Based QSAR Modelling of Natural Leads in Antimicrobial Drug Design

Author(s): J. Renuka Devi*, G. Nandhini Devi, M. Bavanilatha, G. Gayathri, K. Kowsalyaleela, S. Anusha, M. Durga, R. Ramani and K. Sabitha

Volume 1, Issue 1, 2021

Published on: 05 February, 2020

Page: [80 - 84] Pages: 5

DOI: 10.2174/2666001601666200206102612

Abstract

To separate and optimize the bioactive fraction of Hemidesmus indicus as an antimicrobial lead using in silico QSAR model development.

Hemidesmus indicus was extracted by soxhalation. The crude extract is fractionated using solvents of different polarity and assessed for its antimicrobial activity. The bioactive fraction is further analysed by GC-MS to analyse the constituents. These moieties were studied for their molecular interaction using CoMFA based QSAR model development.

The bioactive fraction found to have antibacterial and antifungal activities. GC-MS revealed the presence of eicosane, pthalic acid, oleanen 3 -yl acetate and substituted alkanes. Force field analysis followed by simulation revealed that pthalic acid was found to have interaction with the receptors.

Thus the integration of activity guided fractionation with cheminformatics may reveal the putative leads in drug design. Pthalic acid analogues can thus be optimized further by subjecting to preclinical drug studies.

Keywords: COMFA, QSAR, SYBYL, Hemidesmus indicus, antimicrobial drug discovery, infections diseases.

Graphical Abstract

[1]
Wright, G.D. Opportunities for natural products in 21st century antibiotic discovery. Nat. Prod. Rep., 2017, 34(7), 694-701.
[http://dx.doi.org/10.1039/C7NP00019G] [PMID: 28569300]
[2]
Fair, R.J.; Tor, Y. Antibiotics and bacterial resistance in the 21st century. Perspect. Medicin. Chem., 2014, 6, 25-64.
[http://dx.doi.org/10.4137/PMC.S14459] [PMID: 25232278]
[3]
Lahlou, M. The success of natural products in drug discovery. Pharmacol. Pharm., 2013, 04(03), 17-31.
[http://dx.doi.org/10.4236/pp.2013.43A003]
[4]
Kingston, D.G. Modern natural products drug discovery and its relevance to biodiversity conservation. J. Nat. Prod., 2011, 74(3), 496-511.
[http://dx.doi.org/10.1021/np100550t] [PMID: 21138324]
[5]
Mehta, A.; Sethiya, N.K.; Mehta, C.; Shah, G.B. Anti-arthritis activity of roots of Hemidesmus indicus R.Br. (Anantmul) in rats. Asian Pac. J. Trop. Med., 2012, 5(2), 130-135.
[http://dx.doi.org/10.1016/S1995-7645(12)60011-X] [PMID: 22221757]
[6]
Mehmood, Z.; Dixit, A.; Singh, A. Indian herb Hemidesmus indicus - A potential source of new antimicrobial compounds. Med. Chem., 2016, 6(12), 734-738.
[7]
Gayathri, M.; Kannabiran, K. Antimicrobial activity of Hemidesmus indicus, Ficus bengalensis and Pterocarpus marsupium roxb. Indian J. Pharm. Sci., 2009, 71(5), 578-581.
[http://dx.doi.org/10.4103/0250-474X.58182] [PMID: 20502584]
[8]
Biradi, M.; Hullatti, K. Bioactivity guided isolation of cytotoxic terpenoids and steroids from Premna serratifolia. Pharm. Biol., 2017, 55(1), 1375-1379.
[http://dx.doi.org/10.1080/13880209.2017.1301491] [PMID: 28317412]
[9]
Renukadevi, J.; Nandhinidevi, G.; Bavanilatha, M.; Bharathy, T.K.; Banu, M.J.; Kanimozhi, K. Three-dimensional quantitative structure– activity relationships modeling studies of phytochemicals from Brassicaceae as potent inhibitors against tumor inflammation. Asian J. Pharm. Clin. Res., 2016, 10(1), 321-323.
[http://dx.doi.org/10.22159/ajpcr.2017.v10i1.15361]
[10]
Balupuri, A.; Balasubraman, P.K.; Cho, S.J. 3D-QSAR, docking, molecular dynamics simulation and free energy calculat on studies of some pyrimidine derivatives as novel JAK3 inhibitors. Arab. J. Chem., 2017, 13(1), 1052-1078.
[http://dx.doi.org/10.1016/j.arabjc.2017.09.009]
[11]
Balganesh, T.; Kundu, T.K.; Chakraborty, T.K.; Roy, S. Drug discovery research in India: current state and future prospects. ACS Med. Chem. Lett., 2014, 5(7), 724-726.
[http://dx.doi.org/10.1021/ml500183c] [PMID: 25050153]
[12]
Reddy, A.S.; Tan, Z.; Zhang, S. Curation and analysis of multitargeting agents for polypharmacological modeling. J. Chem. Inf. Model., 2014, 54(9), 2536-2543.
[http://dx.doi.org/10.1021/ci500092j] [PMID: 25133604]

© 2024 Bentham Science Publishers | Privacy Policy