Structural Fragments in Protein Model Refinement

S.   M.   Hollup; W.   R.   Taylor; I.      Jonassen

doi:10.2174/092986608785849263

Abstract

We survey a method that uses patterns of residue packing in known protein structures to refine structural models. The method can be used to refine models that include only one coordinate point per residue (Cα) and is not dependent on homology. We demonstrate that the method improves both decoy and CASP7 target models.

Keywords: protein structure prediction, model refinement

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Protein & Peptide Letters

Title: Structural Fragments in Protein Model Refinement

Volume: 15 Issue: 9

Author(s): S. M. Hollup, W. R. Taylor and I. Jonassen

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Keywords: protein structure prediction, model refinement

Abstract: We survey a method that uses patterns of residue packing in known protein structures to refine structural models. The method can be used to refine models that include only one coordinate point per residue (Cα) and is not dependent on homology. We demonstrate that the method improves both decoy and CASP7 target models.

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Hollup M. S., Taylor R. W. and Jonassen I., Structural Fragments in Protein Model Refinement, Protein & Peptide Letters 2008; 15 (9) . https://dx.doi.org/10.2174/092986608785849263