Modeling The Hierarchical Protein Folding Using Clustering Monte-Carlo Algorithm

Semen   O.   Yesylevskyy; Alexander   P.   Demchenko

doi:10.2174/0929866013409166

Abstract

A new modification of Monte-Carlo algorithm was suggested for the simulation of hierarchical protein folding. When applied to 2D lattice model of 12-member peptide this method allows observing complex kinetic folding behavior with the formation of clustered intermediates.

Keywords: HIERARCHICAL PROTEIN FOLDING, CLUSTERING MONTE-CARLO ALGORITHM, protein folding, Monte-Carlo simulations, lattice models, hierarchical cluster formation

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Protein & Peptide Letters

Title: Modeling The Hierarchical Protein Folding Using Clustering Monte-Carlo Algorithm

Volume: 8 Issue: 6

Author(s): Semen O. Yesylevskyy and Alexander P. Demchenko

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Keywords: HIERARCHICAL PROTEIN FOLDING, CLUSTERING MONTE-CARLO ALGORITHM, protein folding, Monte-Carlo simulations, lattice models, hierarchical cluster formation

Abstract: A new modification of Monte-Carlo algorithm was suggested for the simulation of hierarchical protein folding. When applied to 2D lattice model of 12-member peptide this method allows observing complex kinetic folding behavior with the formation of clustered intermediates.

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Yesylevskyy O. Semen and Demchenko P. Alexander, Modeling The Hierarchical Protein Folding Using Clustering Monte-Carlo Algorithm, Protein & Peptide Letters 2001; 8 (6) . https://dx.doi.org/10.2174/0929866013409166