[1]
Schneider, J.L.; Cuervo, A.M. Liver autophagy: Much more than just taking out the trash. Nat. Rev. Gastroenterol. Hepatol., 2014, 11, 187-200.
[2]
Ueno, T.; Komatsu, M. Autophagy in the liver: Functions in health and disease. Nat. Rev. Gastroenterol. Hepatol., 2017, 14, 170-184.
[3]
Mortimore, G.E.; Lardeux, B.R.; Adams, C.E. Regulation of microautophagy and basal protein turnover in rat liver. Effects of short-term starvation. J. Biol. Chem., 1988, 263, 2506-2512.
[4]
Kaushik, S.; Cuervo, A.M. Chaperones in autophagy. Pharmacol. Res., 2012, 66, 484-493.
[5]
Bandyopadhyay, U.; Kaushik, S.; Varticovski, L.; Cuervo, A.M. The chaperone-mediated autophagy receptor organizes in dynamic protein complexes at the lysosomal membrane. Mol. Cell. Biol., 2008, 28, 5747-5763.
[6]
Cuervo, A.M.; Dice, J.F. A receptor for the selective uptake and degradation of proteins by lysosomes. Science, 1996, 273, 501-503.
[7]
Yang, Z.; Klionsky, D.J. Mammalian autophagy: Core molecular machinery and signaling regulation. Curr. Opin. Cell Biol., 2010, 22, 124-131.
[8]
Mizushima, N.; Yoshimori, T.; Ohsumi, Y. The role of Atg proteins in autophagosome formation. Annu. Rev. Cell Dev. Biol., 2011, 27, 107-132.
[9]
Novak, I.; Dikic, I. Autophagy receptors in developmental clearance of mitochondria. Autophagy, 2011, 7, 301-303.
[10]
Schworer, C.M.; Shiffer, K.A.; Mortimore, G.E. Quantitative relationship between autophagy and proteolysis during graded amino acid deprivation in perfused rat liver. J. Biol. Chem., 1981, 256, 7652-7658.
[11]
Eng, C.H.; Yu, K.; Lucas, J.; Abraham, R.T. Ammonia derived from glutaminolysis is a diffusible regulator of autophagy. Sci. Signal., 2010, 3, ra31.
[12]
Lum, J.J.; Bauer, D.E.; Kong, M.; Thompson, C.B. Growth factor regulation of autophagy and cell survival in the absence of apoptosis. Cell, 2005, 120, 237-248.
[13]
Ezaki, J.; Matsumoto, N.; Takeda-Ezaki, M.; Ueno, T. Liver autophagy contributes to the maintenance of blood glucose and amino acid levels. Autophagy, 2011, 7, 727-736.
[14]
Singh, R.; Kaushik, S.; Wang, Y.; Czaja, M.J. Autophagy regulates lipid metabolism. Nature, 2009, 458, 1131-1135.
[15]
Mei, S.; Ni, H.M.; Manley, S.; Ding, W.X. Differential roles of unsaturated and saturated fatty acids on autophagy and apoptosis in hepatocytes. J. Pharmacol. Exp. Ther., 2011, 339, 487-498.
[16]
Ding, W.X.; Li, M.; Chen, X.; Yin, X.M. Autophagy reduces acute ethanol-induced hepatotoxicity and steatosis in mice. Gastroenterology, 2010, 139, 1740-1752.
[17]
Thoen, L.F.; Guimaraes, E.L.; Dolle, L.; van Grunsven, L.A. A role for autophagy during hepatic stellate cell activation. J. Hepatol., 2011, 55, 1353-1360.
[18]
Hernandez-Gea, V.; Ghiassi-Nejad, Z.; Rozenfeld, R.; Friedman, S.L. Autophagy releases lipid that promotes fibrogenesis by activated hepatic stellate cells in mice and in human tissues. Gastroenterology, 2012, 142, 938-946.
[19]
Cuervo, A.M.; Knecht, E.; Terlecky, S.R.; Dice, J.F. Activation of a selective pathway of lysosomal proteolysis in rat liver by prolonged starvation. Am. J. Physiol., 1995, 269, C1200-C1208.
[20]
Anguiano, J.; Garner, T.P.; Mahalingam, M.; Cuervo, A.M. Chemical modulation of chaperone-mediated autophagy by retinoic acid derivatives. Nat. Chem. Biol., 2013, 9, 374-382.
[21]
Fujita, N.; Morita, E.; Itoh, T.; Yoshimori, T. Recruitment of the autophagic machinery to endosomes during infection is mediated by ubiquitin. J. Cell Biol., 2013, 203, 115-128.
[22]
Komatsu, M.; Waguri, S.; Koike, M.; Tanaka, K. Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice. Cell, 2007, 131, 1149-1163.
[23]
Mathew, R.; Karp, C.M.; Beaudoin, B.; White, E. Autophagy suppresses tumorigenesis through elimination of p62. Cell, 2009, 137, 1062-1075.
[24]
Madrigal-Matute, J.; Cuervo, A.M. Regulation of liver metabolism by autophagy. Gastroenterology, 2016, 150, 328-339.
[25]
Czaja, M.J.; Ding, W.; Donohue, T.M.; Yin, X. Functions of autophagy in normal and diseased liver. Autophagy, 2014, 9, 1131-1158.
[26]
Gual, P.; Gilgenkrantz, H.; Lotersztajn, S. Autophagy in chronic liver diseases: The two faces of Janus. Am. J. Physiol. Cell Physiol., 2017, 312, C263-C273.
[27]
Kaushik, S.; Massey, A.C.; Mizushima, N.; Cuervo, A.M. Constitutive activation of chaperone-mediated autophagy in cells with impaired macroautophagy. Mol. Biol. Cell, 2008, 19, 2179-2192.
[28]
Chuang, S.Y.; Yang, C.H.; Chou, C.C.; Hsu, L.C. TLR-induced PAI-2 expression suppresses IL-1beta processing via increasing autophagy and NLRP3 degradation. Proc. Natl. Acad. Sci. USA, 2013, 110, 16079-16084.
[29]
Liao, X.; Sluimer, J.C.; Wang, Y.; Tabas, I. Macrophage autophagy plays a protective role in advanced atherosclerosis. Cell Metab., 2012, 15, 545-553.
[30]
Lodder, J.; Denaes, T.; Chobert, M.N.; Teixeira-Clerc, F. Macrophage autophagy protects against liver fibrosis in mice. Autophagy, 2015, 11, 1280-1292.
[31]
Liu, K.; Zhao, E.; Ilyas, G.; Czaja, M.J. Impaired macrophage autophagy increases the immune response in obese mice by promoting proinflammatory macrophage polarization. Autophagy, 2015, 11, 271-284.
[32]
Denaes, T.; Lodder, J.; Chobert, M.N.; Teixeira-Clerc, F. The cannabinoid receptor 2 protects against alcoholic liver disease via a macrophage autophagy-dependent pathway. Sci. Rep., 2016, 6, 28806.
[33]
Marra, F.; Lotersztajn, S. Pathophysiology of NASH: Perspectives for a targeted treatment. Curr. Pharm. Des., 2013, 19, 5250-5269.
[34]
Yang, L.; Li, P.; Fu, S.; Hotamisligil, G.S. Defective hepatic autophagy in obesity promotes ER stress and causes insulin resistance. Cell Metab., 2010, 11, 467-478.
[35]
Tran, A.; Gual, P. Non-alcoholic steatohepatitis in morbidly obese patients. Clin. Res. Hepatol. Gastroenterol., 2013, 37, 17-29.
[36]
Schneider, J.L.; Suh, Y.; Cuervo, A.M. Deficient chaperone-mediated autophagy in liver leads to metabolic dysregulation. Cell Metab., 2014, 20, 417-432.
[37]
Koga, H.; Kaushik, S.; Cuervo, A.M. Altered lipid content inhibits autophagic vesicular fusion. FASEB J., 2010, 24, 3052-3065.
[38]
Cui, M.; Yu, H.; Wang, J.; Li, J. Chronic caloric restriction and exercise improve metabolic conditions of dietary-induced obese mice in autophagy correlated manner without involving AMPK. J. Diabetes Res., 2013, 2013, 852754.
[39]
Wang, S.; Pacher, P.; De Lisle, R.C.; Ding, W.X. A mechanistic review of cell death in alcohol-induced liver injury. Alcohol. Clin. Exp. Res., 2016, 40, 1215-1223.
[40]
Ding, W.X.; Li, M.; Yin, X.M. Selective taste of ethanol-induced autophagy for mitochondria and lipid droplets. Autophagy, 2011, 7, 248-249.
[41]
Wu, D.; Wang, X.; Zhou, R.; Cederbaum, A. CYP2E1 enhances ethanol-induced lipid accumulation but impairs autophagy in HepG2 E47 cells. Biochem. Biophys. Res. Commun., 2010, 402, 116-122.
[42]
Levine, B.; Mizushima, N.; Virgin, H.W. Autophagy in immunity and inflammation. Nature, 2011, 469, 323-335.
[43]
Sir, D.; Ou, J.H. Autophagy in viral replication and pathogenesis. Mol. Cells, 2010, 29, 1-7.
[44]
Tian, Y.; Sir, D.; Kuo, C.F.; Ou, J.H. Autophagy required for hepatitis B virus replication in transgenic mice. J. Virol., 2011, 85, 13453-13456.
[45]
Li, J.; Liu, Y.; Wang, Z.; Yuan, Z. Subversion of cellular autophagy machinery by hepatitis B virus for viral envelopment. J. Virol., 2011, 85, 6319-6333.
[46]
Sir, D.; Tian, Y.; Chen, W.L.; Ou, J.H. The early autophagic pathway is activated by hepatitis B virus and required for viral DNA replication. Proc. Natl. Acad. Sci. USA, 2010, 107, 4383-4388.
[47]
Tang, H.; Da, L.; Mao, Y.; Zhao, M. Hepatitis B virus X protein sensitizes cells to starvation-induced autophagy via up-regulation of beclin 1 expression. Hepatology, 2009, 49, 60-71.
[48]
Sir, D.; Chen, W.L.; Choi, J.; Ou, J.H. Induction of incomplete autophagic response by hepatitis C virus via the unfolded protein response. Hepatology, 2008, 48, 1054-1061.
[49]
Ait-Goughoulte, M.; Kanda, T.; Meyer, K.; Ray, R. Hepatitis C virus genotype 1a growth and induction of autophagy. J. Virol., 2008, 82, 2241-2249.
[50]
Dreux, M.; Gastaminza, P.; Wieland, S.F.; Chisari, F.V. The autophagy machinery is required to initiate hepatitis C virus replication. Proc. Natl. Acad. Sci. USA, 2009, 106, 14046-14051.
[51]
Su, W.C.; Chao, T.C.; Huang, Y.L.; Lai, M.M. Rab5 and class III phosphoinositide 3-kinase Vps34 are involved in hepatitis C virus NS4B-induced autophagy. J. Virol., 2011, 85, 10561-10571.
[52]
Shrivastava, S.; Bhanja, C.J.; Steele, R.; Ray, R.B. Hepatitis C virus upregulates Beclin1 for induction of autophagy and activates mTOR signaling. J. Virol., 2012, 86, 8705-8712.
[53]
Ke, P.Y.; Chen, S.S. Activation of the unfolded protein response and autophagy after hepatitis C virus infection suppresses innate antiviral immunity in vitro. J. Clin. Invest., 2011, 121, 37-56.
[54]
Gosert, R.; Egger, D.; Lohmann, V.; Moradpour, D. Identification of the hepatitis C virus RNA replication complex in Huh-7 cells harboring subgenomic replicons. J. Virol., 2003, 77, 5487-5492.
[55]
Guevin, C.; Manna, D.; Belanger, C.; Labonte, P. Autophagy protein ATG5 interacts transiently with the hepatitis C virus RNA polymerase (NS5B) early during infection. Virology, 2010, 405, 1-7.
[56]
Taguwa, S.; Kambara, H.; Fujita, N.; Matsuura, Y. Dysfunction of autophagy participates in vacuole formation and cell death in cells replicating hepatitis C virus. J. Virol., 2011, 85, 13185-13194.
[57]
Shrivastava, S.; Raychoudhuri, A.; Steele, R.; Ray, R.B. Knockdown of autophagy enhances the innate immune response in hepatitis C virus-infected hepatocytes. Hepatology, 2011, 53, 406-414.
[58]
Ding, W.X.; Guo, F.; Ni, H.M.; Yin, X.M. Parkin and mitofusins reciprocally regulate mitophagy and mitochondrial spheroid formation. J. Cell Biol., 2012, 287, 42379-42388.
[59]
Lomas, D.A.; Evans, D.L.; Finch, J.T.; Carrell, R.W. The mechanism of Z alpha 1-antitrypsin accumulation in the liver. Nature, 1992, 357, 605-607.
[60]
Stoller, J.K.; Aboussouan, L.S. A review of alpha1-antitrypsin deficiency. Am. J. Respir. Crit. Care Med., 2012, 185, 246-259.
[61]
Teckman, J.H.; Perlmutter, D.H. Retention of mutant alpha(1)-antitrypsin Z in endoplasmic reticulum is associated with an autophagic response. Am. J. Physiol. Gastrointest. Liver Physiol., 2000, 279, G961-G974.
[62]
Hidvegi, T.; Ewing, M.; Hale, P.; Perlmutter, D.H. An autophagy-enhancing drug promotes degradation of mutant alpha1-antitrypsin Z and reduces hepatic fibrosis. Science, 2010, 329, 229-232.
[63]
Mallat, A.; Lodder, J.; Teixeira-Clerc, F.; Lotersztajn, S. Autophagy: A multifaceted partner in liver fibrosis. BioMed Res. Int., 2014, 2014, 869390.
[64]
Lotersztajn, S.; Julien, B.; Teixeira-Clerc, F.; Mallat, A. Hepatic fibrosis: Molecular mechanisms and drug targets. Annu. Rev. Pharmacol. Toxicol., 2005, 45, 605-628.
[65]
Mallat, A.; Lotersztajn, S. Cellular mechanisms of tissue fibrosis. 5. Novel insights into liver fibrosis. Am. J. Physiol. Cell Physiol., 2013, 305, C789-C799.
[66]
Mathew, R.; Kongara, S.; Beaudoin, B.; White, E. Autophagy suppresses tumor progression by limiting chromosomal instability. Genes Dev., 2007, 21, 1367-1381.
[67]
Liang, X.H.; Jackson, S.; Seaman, M.; Levine, B. Induction of autophagy and inhibition of tumorigenesis by beclin 1. Nature, 1999, 402, 672-676.
[68]
Inami, Y.; Waguri, S.; Sakamoto, A.; Komatsu, M. Persistent activation of Nrf2 through p62 in hepatocellular carcinoma cells. J. Cell Biol., 2011, 193, 275-284.
[69]
Yang, X.; Yu, D.; Yan, F.; Wei, L. The role of autophagy induced by tumor microenvironment in different cells and stages of cancer. Cell Biosci., 2015, 5, 14.
[70]
Sun, K.; Guo, X.; Zhao, Q.; Wei, L. Paradoxical role of autophagy in the dysplastic and tumor-forming stages of hepatocarcinoma development in rats. Cell Death Dis., 2013, 4, e501.
[71]
Takamura, A.; Komatsu, M.; Hara, T.; Mizushima, N. Autophagy-deficient mice develop multiple liver tumors. Genes Dev., 2011, 25, 795-800.
[72]
Xu, Y.; An, Y.; Wang, Y.; Li, X. miR-101 inhibits autophagy and enhances cisplatin-induced apoptosis in hepatocellular carcinoma cells. Oncol. Rep., 2013, 29, 2019-2024.
[73]
Decaens, T.; Luciani, A.; Itti, E.; Duvoux, C. Phase II study of sirolimus in treatment-naive patients with advanced hepatocellular carcinoma. Dig. Liver Dis., 2012, 44, 610-616.