Predicting Key Long-Range Interaction Sites by B-Factors

Peng      Chen; Kyungsook      Han; Xueling      Li; De-Shuang      Huang

doi:10.2174/092986608784567573

Abstract

In this paper, we adopted the bounded support vector machine to locate the key long-range interaction sites by the use of predicted local lowest B-factors. As a result, the key long-range interaction residues can be located based on information of local lowest B-factor sites.

Keywords: B-factors, bounded support vector machine, long-range interaction sites, local lowest B-factor sites

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Protein & Peptide Letters

Title: Predicting Key Long-Range Interaction Sites by B-Factors

Volume: 15 Issue: 5

Author(s): Peng Chen, Kyungsook Han, Xueling Li and De-Shuang Huang

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Keywords: B-factors, bounded support vector machine, long-range interaction sites, local lowest B-factor sites

Abstract: In this paper, we adopted the bounded support vector machine to locate the key long-range interaction sites by the use of predicted local lowest B-factors. As a result, the key long-range interaction residues can be located based on information of local lowest B-factor sites.

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Chen Peng, Han Kyungsook, Li Xueling and Huang De-Shuang, Predicting Key Long-Range Interaction Sites by B-Factors, Protein & Peptide Letters 2008; 15 (5) . https://dx.doi.org/10.2174/092986608784567573