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Current Genomics

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ISSN (Print): 1389-2029
ISSN (Online): 1875-5488

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Mini-Review Article

Genomic and Bioinformatic Resources for Perennial Fruit Species

Author(s): Jérôme Grimplet*

Volume 23, Issue 4, 2022

Published on: 19 July, 2022

Page: [217 - 233] Pages: 17

DOI: 10.2174/1389202923666220428102632

Price: $65

Abstract

In the post-genomic era, data management and development of bioinformatic tools are critical for the adequate exploitation of genomics data. In this review, we address the actual situation for the subset of crops represented by the perennial fruit species. The agronomical singularity of these species compared to plant and crop model species provides significant challenges on the implementation of good practices generally not addressed in other species. Studies are usually performed over several years in non-controlled environments, usage of rootstock is common, and breeders heavily rely on vegetative propagation. A reference genome is now available for all the major species as well as many members of the economically important genera for breeding purposes. Development of pangenome for these species is beginning to gain momentum which will require a substantial effort in term of bioinformatic tool development. The available tools for genome annotation and functional analysis will also be presented.

Keywords: Fruits, genomics, bioinformatics, metadata, genome, gene annotation, transcriptomics, pangenome.

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