摘要
DNA甲基化被认为是表观遗传修饰的重要组成部分,是近几十年来的研究热点。它通常是在DNA碱基序列保持不变的情况下,一个甲基加到胞嘧啶的第5个碳原子上。DNA甲基化对维持细胞功能、遗传印迹、胚胎发育和肿瘤发生过程有重要影响,因此DNA甲基化的分析具有重要的医学意义。随着分析技术的发展和DNA甲基化研究的深入,基于生物传感技术的DNA甲基化检测策略层出不穷,以满足不同的研究需求。本文综述了近年来DNA甲基化电化学和光学生物传感分析的研究进展;此外,我们还综述了近年来利用纳米孔生物传感器等新技术检测DNA甲基化的一些进展,并重点介绍了这些方法所涉及的关键技术和生物挑战。希望本文能为DNA甲基化分析方法的选择和建立提供有益的参考。
关键词: DNA甲基化被认为是表观遗传修饰的重要组成部分,是近几十年来的研究热点。它通常是在DNA碱基序列保持不变的情况下,一个甲基加到胞嘧啶的第5个碳原子上。DNA甲基化对维持细胞功能、遗传印迹、胚胎发育和肿瘤发生过程有重要影响,因此DNA甲基化的分析具有重要的医学意义。随着分析技术的发展和DNA甲基化研究的深入,基于生物传感技术的DNA甲基化检测策略层出不穷,以满足不同的研究需求。本文综述了近年来DNA甲基化电化学和光学生物传感分析的研究进展;此外,我们还综述了近年来利用纳米孔生物传感器等新技术检测DNA甲基化的一些进展,并重点介绍了这些方法所涉及的关键技术和生物挑战。希望本文能为DNA甲基化分析方法的选择和建立提供有益的参考。 DNA甲基化,甲基化测定,电化学生物传感器,光学生物传感器,癌症诊断,表观遗传学
[http://dx.doi.org/10.1126/science.1063443] [PMID: 11498579]
[http://dx.doi.org/10.1038/npp.2012.112] [PMID: 22781841]
[http://dx.doi.org/10.1016/S0065-2660(06)56005-5] [PMID: 16735158]
[http://dx.doi.org/10.1016/j.cell.2007.01.029] [PMID: 17320506]
[http://dx.doi.org/10.1158/0008-5472.CAN-06-0293] [PMID: 16951157]
[http://dx.doi.org/10.1038/25779] [PMID: 9738504]
[http://dx.doi.org/10.1038/5947] [PMID: 9988266]
[http://dx.doi.org/10.1016/j.neurobiolaging.2008.12.005] [PMID: 19117641]
[http://dx.doi.org/10.1016/j.mam.2012.08.001] [PMID: 22981780]
[http://dx.doi.org/10.1071/RD05118] [PMID: 16478603]
[http://dx.doi.org/10.1038/nrc1507] [PMID: 15573120]
[http://dx.doi.org/10.1038/ng1007] [PMID: 12355068]
[http://dx.doi.org/10.1038/301089a0] [PMID: 6185846]
[http://dx.doi.org/10.1073/pnas.91.21.9700] [PMID: 7937876]
[http://dx.doi.org/10.1038/nrc1799] [PMID: 16491070]
[http://dx.doi.org/10.1016/j.biocel.2008.09.003] [PMID: 18834953]
[http://dx.doi.org/10.1016/S1470-2045(08)70038-X] [PMID: 18339581]
[http://dx.doi.org/10.1158/0008-5472.CAN-04-1529] [PMID: 15374957]
[http://dx.doi.org/10.1016/j.mrfmmm.2015.05.002] [PMID: 26073472]
[http://dx.doi.org/10.1182/blood-2009-04-214668] [PMID: 19965625]
[http://dx.doi.org/10.1158/0008-5472.CAN-05-1187] [PMID: 16204069]
[http://dx.doi.org/10.1016/j.jmoldx.2012.06.007] [PMID: 23127612]
[http://dx.doi.org/10.1073/pnas.89.5.1827] [PMID: 1542678]
[http://dx.doi.org/10.1093/nar/22.15.2990] [PMID: 8065911]
[http://dx.doi.org/10.1073/pnas.93.18.9821] [PMID: 8790415]
[http://dx.doi.org/10.1016/j.canlet.2011.07.006] [PMID: 21820798]
[http://dx.doi.org/10.1093/nar/28.8.e32] [PMID: 10734209]
[http://dx.doi.org/10.1093/nar/gkm013] [PMID: 17289753]
[http://dx.doi.org/10.1038/nprot.2007.314] [PMID: 17853883]
[http://dx.doi.org/10.1016/j.bios.2017.06.004] [PMID: 28641203]
[http://dx.doi.org/10.1126/science.424726] [PMID: 424726]
[http://dx.doi.org/10.1021/ac3015774] [PMID: 22924825]
[http://dx.doi.org/10.1021/ac901681k] [PMID: 19788313]
[http://dx.doi.org/10.1016/j.ab.2004.02.024] [PMID: 15136161]
[http://dx.doi.org/10.1021/ac020050h] [PMID: 12236365]
[http://dx.doi.org/10.1016/j.ab.2011.01.026] [PMID: 21272560]
[http://dx.doi.org/10.1016/j.bios.2016.02.057] [PMID: 26926592]
[http://dx.doi.org/10.1101/gr.202801] [PMID: 11779841]
[http://dx.doi.org/10.1016/S0022-0728(96)04954-6]
[http://dx.doi.org/10.1016/j.bios.2014.02.035] [PMID: 24613968]
[http://dx.doi.org/10.1021/acs.chemrev.6b00220] [PMID: 27428515]
[http://dx.doi.org/10.3109/07388559509147402] [PMID: 7641291]
[http://dx.doi.org/10.1111/j.1749-6632.1962.tb13623.x] [PMID: 14021529]
[http://dx.doi.org/10.1021/la503533g] [PMID: 25402969]
[http://dx.doi.org/10.5772/46227]
[http://dx.doi.org/10.3390/s80314000] [PMID: 27879772]
[http://dx.doi.org/10.1016/S0039-6028(01)01809-X]
[http://dx.doi.org/10.1021/nl203780d] [PMID: 22268573]
[http://dx.doi.org/10.1007/s00216-005-0032-7] [PMID: 16132144]
[http://dx.doi.org/10.1016/j.bios.2012.09.010] [PMID: 23021851]
[http://dx.doi.org/10.1016/j.snb.2015.06.045]
[http://dx.doi.org/10.1016/j.aca.2014.06.020] [PMID: 25086890]
[http://dx.doi.org/10.1039/C3AN02154H] [PMID: 24358460]
[http://dx.doi.org/10.1016/j.bios.2015.11.007] [PMID: 26562330]
[http://dx.doi.org/10.1016/j.elecom.2016.02.008]
[http://dx.doi.org/10.1016/j.aca.2013.01.026] [PMID: 23473252]
[http://dx.doi.org/10.1021/ja710536p] [PMID: 18314986]
[http://dx.doi.org/10.1016/j.electacta.2013.09.037]
[http://dx.doi.org/10.1016/j.bios.2017.02.026] [PMID: 28259051]
[http://dx.doi.org/10.1016/j.electacta.2012.05.115]
[http://dx.doi.org/10.1039/c2cc35615e] [PMID: 23010984]
[http://dx.doi.org/10.1016/j.bios.2016.09.016] [PMID: 27616287]
[http://dx.doi.org/10.1016/j.jelechem.2016.03.001]
[http://dx.doi.org/10.1021/acs.analchem.7b00533] [PMID: 28466637]
[http://dx.doi.org/10.1016/j.snb.2015.07.030]
[http://dx.doi.org/10.1016/j.bios.2018.07.055] [PMID: 30196047]
[http://dx.doi.org/10.1016/j.bios.2013.10.050] [PMID: 24240168]
[http://dx.doi.org/10.1016/j.bios.2014.01.029] [PMID: 24514080]
[http://dx.doi.org/10.1039/c3cc38942a] [PMID: 23364409]
[http://dx.doi.org/10.1016/j.jelechem.2016.06.042]
[http://dx.doi.org/10.1016/j.snb.2012.11.058]
[http://dx.doi.org/10.1039/C5LC00458F] [PMID: 26194344]
[http://dx.doi.org/10.1101/gr.5273806] [PMID: 16809668]
[http://dx.doi.org/10.1126/science.1962209] [PMID: 1962209]
[http://dx.doi.org/10.1039/C5AY03397G]
[http://dx.doi.org/10.1039/c2cc15398j] [PMID: 22218332]
[http://dx.doi.org/10.1093/nar/gng092] [PMID: 12907744]
[http://dx.doi.org/10.4161/epi.2.2.4203] [PMID: 17965602]
[http://dx.doi.org/10.1016/j.bios.2014.11.026] [PMID: 25437362]
[http://dx.doi.org/10.1021/ja4085918] [PMID: 24164112]
[http://dx.doi.org/10.1039/C8AN00047F] [PMID: 29897056]
[http://dx.doi.org/10.1016/j.bios.2015.02.005] [PMID: 25682501]
[http://dx.doi.org/10.1007/s40242-017-7152-4]
[http://dx.doi.org/10.1073/pnas.96.11.6171] [PMID: 10339560]
[http://dx.doi.org/10.1016/j.bios.2012.04.012] [PMID: 22560164]
[http://dx.doi.org/10.1039/c2cc32397d] [PMID: 22610282]
[http://dx.doi.org/10.1016/j.bios.2015.12.100] [PMID: 26807517]
[http://dx.doi.org/10.1016/j.snb.2015.05.058]
[http://dx.doi.org/10.1016/j.aca.2017.07.021] [PMID: 28870318]
[http://dx.doi.org/10.1074/jbc.RA118.001785] [PMID: 29567833]
[http://dx.doi.org/10.1039/C5CC05921F] [PMID: 26291430]
[http://dx.doi.org/10.1039/C7AN00526A] [PMID: 28516982]
[http://dx.doi.org/10.1038/s41598-018-24902-1] [PMID: 29686400]
[http://dx.doi.org/10.1016/j.bios.2018.10.020] [PMID: 30396016]
[http://dx.doi.org/10.1016/j.bios.2017.07.063] [PMID: 28759870]
[http://dx.doi.org/10.2217/epi.15.39] [PMID: 25927341]
[http://dx.doi.org/10.1007/s00604-013-1141-1]
[http://dx.doi.org/10.1016/j.bios.2013.04.040] [PMID: 23708816]
[http://dx.doi.org/10.1016/j.snb.2013.10.099]
[http://dx.doi.org/10.1016/j.bios.2016.09.060] [PMID: 27666367]
[http://dx.doi.org/10.1021/acsnano.6b04748] [PMID: 27580095]
[http://dx.doi.org/10.1016/j.bios.2014.11.015] [PMID: 25460890]
[http://dx.doi.org/10.1093/nass/nrp103]]
[http://dx.doi.org/10.1016/j.bios.2014.10.041] [PMID: 25461158]
[http://dx.doi.org/10.1021/ac401346x] [PMID: 23777269]
[http://dx.doi.org/10.1016/j.bios.2017.12.035] [PMID: 29277012]
[http://dx.doi.org/10.1016/j.snb.2017.01.016]
[http://dx.doi.org/10.1039/C7SC04813K] [PMID: 29675180]
[http://dx.doi.org/10.1016/j.bios.2014.09.044] [PMID: 25282398]
[http://dx.doi.org/10.1016/j.bios.2014.03.033] [PMID: 24768860]
[http://dx.doi.org/10.1016/j.bios.2016.05.067] [PMID: 27240011]
[http://dx.doi.org/10.1016/j.elecom.2015.09.025]
[http://dx.doi.org/10.1021/ac202692f] [PMID: 22263690]
[http://dx.doi.org/10.1039/C3CC49719D] [PMID: 24501739]
[http://dx.doi.org/10.1039/C7AN00486A] [PMID: 28513652]
[http://dx.doi.org/10.1016/j.bios.2015.11.068] [PMID: 26700581]
[http://dx.doi.org/10.1016/j.bios.2014.07.079] [PMID: 25129507]
[http://dx.doi.org/10.1039/c0cc00983k] [PMID: 20830331]
[http://dx.doi.org/10.1016/j.electacta.2013.02.050]
[http://dx.doi.org/10.1002/elan.201300040]
[http://dx.doi.org/10.1039/b303282e] [PMID: 12894830]
[http://dx.doi.org/10.1021/ac5044785] [PMID: 25635709]
[http://dx.doi.org/10.1021/acs.analchem.6b01265] [PMID: 27620533]
[http://dx.doi.org/10.1016/j.electacta.2015.06.043]
[http://dx.doi.org/10.1016/j.bmcl.2015.11.017] [PMID: 26584880]
[http://dx.doi.org/10.1007/978-1-4939-6343-0_8] [PMID: 27671935]
[http://dx.doi.org/10.1016/j.mrrev.2017.05.001]] [PMID: 28927538]
[http://dx.doi.org/10.1039/c2cc35841g] [PMID: 23133830]
[http://dx.doi.org/10.1039/c3lc50528f] [PMID: 24061339]
[http://dx.doi.org/10.1039/C4CC07688E] [PMID: 25621431]
[http://dx.doi.org/10.1039/C5CC03921E] [PMID: 26063626]
[http://dx.doi.org/10.1002/(SICI)1521-4109(199912)11:18<1372:AID-ELAN1372>3.0.CO;2-4]
[http://dx.doi.org/10.1016/j.bios.2015.03.060] [PMID: 25840015]
[http://dx.doi.org/10.1073/pnas.1417351111] [PMID: 25288757]
[http://dx.doi.org/10.1016/j.talanta.2016.01.026] [PMID: 26992515]
[http://dx.doi.org/10.1016/j.jelechem.2018.02.060]
[http://dx.doi.org/10.1016/j.jinorgbio.2016.11.020] [PMID: 27893990]
[http://dx.doi.org/10.1016/j.aca.2011.12.010] [PMID: 22244165]
[http://dx.doi.org/10.1002/elan.201700028]
[http://dx.doi.org/10.1007/s00604-015-1564-y]
[http://dx.doi.org/10.1016/j.bmcl.2017.05.049] [PMID: 28583799]
[http://dx.doi.org/10.1016/j.aca.2016.06.037] [PMID: 27506345]
[http://dx.doi.org/10.1016/j.jelechem.2017.12.011]
[http://dx.doi.org/10.1039/C4CC06732K] [PMID: 25227312]
[http://dx.doi.org/10.1039/C7AN00611J] [PMID: 28861578]
[http://dx.doi.org/10.1016/j.aca.2017.04.034] [PMID: 28576321]
[http://dx.doi.org/10.1021/acs.langmuir.7b02812] [PMID: 28946748]
[http://dx.doi.org/10.1016/j.elecom.2017.07.013]
[http://dx.doi.org/10.1016/j.talanta.2014.07.094] [PMID: 25281112]
[http://dx.doi.org/10.3390/s16101561] [PMID: 27669248]
[http://dx.doi.org/10.1016/j.trac.2014.11.013]
[http://dx.doi.org/10.1016/j.bpj.2008.12.3760] [PMID: 19217843]
[http://dx.doi.org/10.1038/s41598-017-00317-2] [PMID: 28298646]
[http://dx.doi.org/10.1073/pnas.1310240110] [PMID: 24167255]
[http://dx.doi.org/10.1038/srep02381] [PMID: 24135881]