Research Article

常染色体隐性非综合征圆锥角膜:候选新型基因GALNT14的纯合移码变体。

卷 19, 期 9, 2019

页: [683 - 687] 页: 5

弟呕挨: 10.2174/1566524019666190730095630

价格: $65

摘要

背景:圆锥角膜(KC)通常是双侧,非炎性进行性角膜扩张,其中角膜逐渐变薄且呈圆锥形。 尽管有充分的证据表明在KC中有遗传贡献,但在大多数情况下仍不了解KC的病因。 方法:在这项研究中,我们使用全外显子组测序确定了近亲家庭中两个同胞中KC的遗传原因。 在基因N乙酰半乳糖胺基转移酶14(GALNT14)中鉴定了纯合移码变体NM_001253826.1:c.60delC; p.Leu21Cysfs * 6。 该变体在我们的内部外显子组数据库中也不存在于所有公共数据库中。 此外,没有数据库显示候选基因功能变异的纯合子丢失。 结果:GALNT14催化O型寡糖生物合成中的初始反应,将N-乙酰基-D-半乳糖胺残基转移到靶蛋白上的丝氨酸或苏氨酸残基上 特别是粘蛋白。 结论:由于粘蛋白糖基化的改变与多种眼部疾病有关,我们在这项研究中证明了截短蛋白GALNT14与KC之间的关联。

关键词: NGS,基因组,眼,上皮,干眼,圆锥角膜。

[1]
Krachmer JH, Feder RS, Belin MW. Keratoconus and related noninflammatory corneal thinning disorders. Surv Ophthalmol 1984; 28(4): 293-322.
[http://dx.doi.org/10.1016/0039-6257(84)90094-8] [PMID: 6230745]
[2]
Li X, Rabinowitz YS, Rasheed K, Yang H. Longitudinal study of the normal eyes in unilateral keratoconus patients. Ophthalmology 2004; 111(3): 440-6.
[http://dx.doi.org/10.1016/j.ophtha.2003.06.020] [PMID: 15019316]
[3]
Abu-Amero KK, Al-Muammar AM, Kondkar AA. Genetics of keratoconus: Where do we stand? J Ophthalmol 2014.2014641708
[http://dx.doi.org/10.1155/2014/641708] [PMID: 25254113]
[4]
Burdon KP, Vincent AL. Insights into keratoconus from a genetic perspective. Clin Exp Optom 2013; 96( 2): 146-54.
[http://dx.doi.org/10.1111/cxo.12024] [PMID: 23387289]
[5]
Hao XD, Chen P, Zhang YY, Li SX, Shi WY, Gao H. De novo mutations of TUBA3D are associated with keratoconus. Sci Rep 2017; 7( 1): 13570..
[http://dx.doi.org/10.1038/s41598-017-13162-0] [PMID: 29051577]
[6]
Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010; 26(5): 589-95.
[http://dx.doi.org/10.1093/bioinformatics/btp698] [PMID: 20080505]
[7]
Faust GG, Hall IM. SAMBLASTER: fast duplicate marking and structural variant read extraction. Bioinformatics 2014; 30(17): 2503-5.
[http://dx.doi.org/10.1093/bioinformatics/btu314] [PMID: 24812344]
[8]
Garrison Erik. Marth Gabor. Haplotype-based variant detection from short-read sequencing 2012.
[9]
Cingolani P, Platts A, Wang L, et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 2012; 6(2): 80-92.
[http://dx.doi.org/10.4161/fly.19695] [PMID: 22728672]
[10]
Marc Sturm, Christopher Schroeder, Tobias Haack. megSAP a medical genetics sequence analysis pipeline. European Society of Human Genetics annual meeting 2017 2017.
[11]
Untergasser A, Cutcutache I, Koressaar T, et al. Primer3--new capabilities and interfaces. Nucleic Acids Res 2012; 40(15)e115
[http://dx.doi.org/10.1093/nar/gks596] [PMID: 22730293]
[12]
Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics 2007; 23(10): 1289-91.
[http://dx.doi.org/10.1093/bioinformatics/btm091] [PMID: 17379693]
[13]
Adzhubei I, Jordan DM, Sunyaev SR. 2013.Predicting functional effect of human missense mutations using PolyPhen-2 Curr Protoc Hum Genet [http://10.1002/0471142905.hg0720s76]
[14]
Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 2003; 31(13): 3812-4.
[http://dx.doi.org/10.1093/nar/gkg509] [PMID: 12824425]
[15]
Wang H, Tachibana K, Zhang Y, et al. Cloning and characterization of a novel UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase, pp-GalNAc-T14. Biochem Biophys Res Commun 2003; 300(3): 738-44.
[http://dx.doi.org/10.1016/S0006-291X(02)02908-X] [PMID: 12507512]
[16]
Mantelli F, Argüeso P. Functions of ocular surface mucins in health and disease. Curr Opin Allergy Clin Immunol 2008; 8(5): 477-83.
[http://dx.doi.org/10.1097/ACI.0b013e32830e6b04] [PMID: 18769205]
[17]
Gendler SJ, Spicer AP. Epithelial mucin genes. Annu Rev Physiol 1995; 57: 607-34.
[http://dx.doi.org/10.1146/annurev.ph.57.030195.003135] [PMID: 7778880]
[18]
Hanisch F-G. O-glycosylation of the mucin type. Biol Chem 2001; 382(2): 143-9.
[http://dx.doi.org/10.1515/BC.2001.022] [PMID: 11308013]
[19]
Chao, Chien-chyou W., Susan M. Butala, and Anthony Herp. Studies on the isolation and composition of human ocular mucin. Exp Eye Res 1988; 47: 185-96.

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