摘要
目前对人类免疫缺陷病毒蛋白酶(HIV-1 PR)作为治疗艾滋病的药物靶点的研究需要更新,以促进进一步开发具有更好抑制活性的有前途的抑制剂。在过去的20年里,每年都有多达100篇关于HIV-1 PR的抑制和催化机制的学术报告发表。但没有关于HIV-1 PR作用导致感染性病毒粒子释放的基本文献综述。本文就HIV-1 PR涉及其天然靶点的识别模式和反应机制提供了最新进展(计算和实验)。这篇评论收录了80多篇来自著名期刊的文章。该酶及其突变类似物对天然Gag和Gag- pol裂解连接的识别首次被提出。随后,对文献中HIV-1 PR对其天然多肽序列的酶促作用机制进行了全面的剖析。此外,我们强调了正在进行的研究课题,利用硅方法可以在分子水平上对HIV-1蛋白酶的自然底物的催化机制提供更深入的见解。了解HIV-1 PR的识别和催化机制,导致感染病毒粒子的释放,并有意影响免疫系统,将有助于设计基于机制的抑制剂,提高生物活性。
关键词: HIV-1 PR,自然底物,识别模式,反应机制,过渡状态模型,免疫系统。
[http://dx.doi.org/10.1021/ja992849p]
[http://dx.doi.org/10.1107/S0907444901013865] [PMID: 11679720]
[http://dx.doi.org/10.1006/bbrc.2001.5555] [PMID: 11549287]
[http://dx.doi.org/10.3390/molecules22101723] [PMID: 29027981]
[http://dx.doi.org/10.4103/1673-5374.219031] [PMID: 29239314]
[http://dx.doi.org/10.3389/fnmol.2017.00207] [PMID: 28713240]
[http://dx.doi.org/10.1080/15216549800203222] [PMID: 9713704]
[http://dx.doi.org/10.1002/med.21475] [PMID: 29149530]
[http://dx.doi.org/10.1073/pnas.93.19.10034] [PMID: 8816746]
[http://dx.doi.org/10.1021/jp200565w] [PMID: 21667951]
[http://dx.doi.org/10.1111/cbdd.12690] [PMID: 26613568]
[http://dx.doi.org/10.1016/j.pep.2016.02.013] [PMID: 26917227]
[http://dx.doi.org/10.1073/pnas.84.24.8903] [PMID: 3321060]
[http://dx.doi.org/10.1016/S0006-291X(88)80839-8] [PMID: 3052448]
[http://dx.doi.org/10.1006/jmbi.2000.4018] [PMID: 10966816]
[http://dx.doi.org/10.1093/nar/28.1.235] [PMID: 10592235]
[http://dx.doi.org/10.1016/S0969-2126(02)00720-7] [PMID: 12005435]
[PMID: 25897264]
[http://dx.doi.org/10.1021/cr010167q] [PMID: 12475196]
[http://dx.doi.org/10.1002/prot.1057] [PMID: 11340661]
[http://dx.doi.org/10.1074/jbc.M112.339374] [PMID: 22334652]
[http://dx.doi.org/10.1021/jp037651c]
[http://dx.doi.org/10.1007/s00214-007-0275-9]
[http://dx.doi.org/10.1021/cr300314q] [PMID: 24024775]
[http://dx.doi.org/10.2174/1386207320666171121110019] [PMID: 29165067]
[http://dx.doi.org/10.1002/jcc.20084] [PMID: 15264254]
[http://dx.doi.org/10.1016/S0083-6729(00)58026-1] [PMID: 10668400]
[http://dx.doi.org/10.2174/1568026043388529] [PMID: 15134553]
[http://dx.doi.org/10.1097/COH.0b013e32801682f6] [PMID: 19372875]
[http://dx.doi.org/10.1039/b208248a] [PMID: 12929379]
[http://dx.doi.org/10.2174/1381612811319230009] [PMID: 23170891]
[http://dx.doi.org/10.1006/abio.2000.4539] [PMID: 10847614]
[http://dx.doi.org/10.1016/j.ejmech.2012.06.019] [PMID: 22867528]
[http://dx.doi.org/10.1016/j.ejmech.2012.03.027] [PMID: 22542107]
[http://dx.doi.org/10.3109/14756366.2011.633907] [PMID: 22339087]
[http://dx.doi.org/10.1089/aid.1992.8.153] [PMID: 1540403]
[PMID: 15489160]
[http://dx.doi.org/10.1128/JVI.80.7.3607-3616.2006] [PMID: 16537628]
[http://dx.doi.org/10.1002/prot.21023] [PMID: 16741993]
[http://dx.doi.org/10.1021/ct300076y] [PMID: 23144597]
[http://dx.doi.org/10.1021/cb400468c] [PMID: 23952265]
[http://dx.doi.org/10.1021/jp910958u] [PMID: 20121080]
[http://dx.doi.org/10.2174/0929867023368890] [PMID: 12369875]
[http://dx.doi.org/10.1046/j.1432-1327.2000.01714.x] [PMID: 11012683]
[http://dx.doi.org/10.1002/(SICI)1097-0134(1999)37:3+<104::AID-PROT14>3.0.CO;2-P] [PMID: 10526358]
[http://dx.doi.org/10.1080/08927020211973]
[http://dx.doi.org/10.1063/1.1587119]
[http://dx.doi.org/10.1002/jcc.20025] [PMID: 15027110]
[http://dx.doi.org/10.1016/j.jmb.2011.03.053] [PMID: 21762811]
[http://dx.doi.org/10.1063/1.1730376]
[http://dx.doi.org/10.1111/j.1747-0285.2007.00514.x] [PMID: 17539822]
[http://dx.doi.org/10.1021/ja076558p] [PMID: 18412349]
[http://dx.doi.org/10.1097/COH.0b013e3283136cee] [PMID: 19373036]
[http://dx.doi.org/10.1128/JVI.02531-09] [PMID: 20237088]
[http://dx.doi.org/10.1002/pro.2086] [PMID: 22549928]
[http://dx.doi.org/10.1002/pro.5560060807] [PMID: 9260279]
[http://dx.doi.org/10.1128/JVI.76.20.10226-10233.2002] [PMID: 12239298]
[http://dx.doi.org/10.1128/JVI.79.16.10601-10607.2005] [PMID: 16051852]
[http://dx.doi.org/10.1006/viro.2000.0420] [PMID: 10964781]
[http://dx.doi.org/10.1128/AAC.00574-10] [PMID: 20660676]
[http://dx.doi.org/10.1002/prot.340110407] [PMID: 1758883]
[http://dx.doi.org/10.1111/j.1742-4658.2005.04923.x] [PMID: 16218957]
[http://dx.doi.org/10.1021/ct200668a] [PMID: 24348205]
[http://dx.doi.org/10.1128/AAC.42.10.2637] [PMID: 9756769]
[http://dx.doi.org/10.1345/aph.18089] [PMID: 10200859]
[http://dx.doi.org/10.1111/eva.12241] [PMID: 25685193]
[http://dx.doi.org/10.1016/S0006-3495(01)76033-X] [PMID: 11159421]
[http://dx.doi.org/10.1016/j.biochi.2015.08.009] [PMID: 26300060]
[http://dx.doi.org/10.3390/biology1010081] [PMID: 24832048]
[http://dx.doi.org/10.1007/s10930-011-9316-2] [PMID: 21394574]
[http://dx.doi.org/10.1107/S0907444911011541] [PMID: 21636892]
[http://dx.doi.org/10.1016/j.bbrc.2012.12.045] [PMID: 23261453]
[http://dx.doi.org/10.1073/pnas.1716098114]
[http://dx.doi.org/10.1074/jbc.271.52.33231] [PMID: 8969180]
[http://dx.doi.org/10.1074/jbc.271.12.6781] [PMID: 8636100]
[http://dx.doi.org/10.1046/j.1432-1033.2002.03105.x] [PMID: 12180988]
[http://dx.doi.org/10.1016/0014-5793(91)80186-7] [PMID: 2001747]
[http://dx.doi.org/10.1002/prot.21514] [PMID: 17729291]
[http://dx.doi.org/10.1002/cbdv.200790210] [PMID: 18027371]
[http://dx.doi.org/10.1021/jm400684f] [PMID: 23772563]
[http://dx.doi.org/10.1002/anie.201509989] [PMID: 26958828]
[http://dx.doi.org/10.1021/ja00102a057]
[http://dx.doi.org/10.1038/nsb1196-946] [PMID: 8901873]
[http://dx.doi.org/10.1021/bi961268z] [PMID: 8756455]
[http://dx.doi.org/10.1021/ct0600060] [PMID: 19079786]
[http://dx.doi.org/10.1016/j.ejmech.2011.05.071] [PMID: 21741133]
[http://dx.doi.org/10.1021/acscatal.5b00759]
[http://dx.doi.org/10.1021/ja9929178]
[http://dx.doi.org/10.1016/S0166-1280(00)00834-4]
[http://dx.doi.org/10.1016/j.bpj.2011.11.246]
[http://dx.doi.org/10.1002/prot.20660] [PMID: 16231289]
[http://dx.doi.org/10.1021/jp504011c] [PMID: 25340507]
[http://dx.doi.org/10.1002/(SICI)1097-0134(20000401)39:1<26:AID-PROT3>3.0.CO;2-N] [PMID: 10737924]
[http://dx.doi.org/10.1016/S0968-0004(98)01254-7] [PMID: 9787641]
[http://dx.doi.org/10.1016/j.bmcl.2011.02.105] [PMID: 21429747]
[http://dx.doi.org/10.1073/pnas.86.6.1841] [PMID: 2648384]
[http://dx.doi.org/10.1021/ja00063a005]
[http://dx.doi.org/10.1021/ja003145e] [PMID: 11535077]
[http://dx.doi.org/10.1110/ps.0206702] [PMID: 12237461]
[http://dx.doi.org/10.1016/S0022-2836(02)00301-7] [PMID: 12051929]
[http://dx.doi.org/10.1021/ar000184m] [PMID: 11601963]
[http://dx.doi.org/10.1063/1.464304]
[http://dx.doi.org/10.1002/jcc.1058]
[http://dx.doi.org/10.1021/bi060131y] [PMID: 16784222]
[http://dx.doi.org/10.1021/ja00125a018]
[http://dx.doi.org/10.1110/ps.03372304] [PMID: 14739332]
[http://dx.doi.org/10.1021/bi00097a015] [PMID: 8241126]
[http://dx.doi.org/10.1021/ja9513188]
[http://dx.doi.org/10.1006/jmbi.1996.0476] [PMID: 8780786]
[http://dx.doi.org/10.1006/jmbi.1996.0026] [PMID: 8551523]
[http://dx.doi.org/10.1246/nikkashi.1997.260]
[http://dx.doi.org/10.1021/ja9841106]
[http://dx.doi.org/10.1016/S0006-3495(02)75209-0] [PMID: 12124265]
[http://dx.doi.org/10.1021/jacs.6b06856] [PMID: 27935692]
[http://dx.doi.org/10.1002/(SICI)1097-461X(1996)60:6<1143:AID-QUA4>3.0.CO;2-#]
[http://dx.doi.org/10.1002/1097-461X(2001)82:2<86:AID-QUA1024>3.0.CO;2-E]
[http://dx.doi.org/10.1103/PhysRev.136.B864]
[http://dx.doi.org/10.1103/PhysRev.46.618]
[http://dx.doi.org/10.1021/bi00098a023] [PMID: 1883830]
[http://dx.doi.org/10.1021/bi00098a024] [PMID: 1883831]
[http://dx.doi.org/10.1016/0014-5793(78)80613-9] [PMID: 346376]
[http://dx.doi.org/10.1111/j.1432-1033.1981.tb06321.x] [PMID: 6790282]
[http://dx.doi.org/10.1042/BJ20041804] [PMID: 15794743]
[http://dx.doi.org/10.1073/pnas.1202808109] [PMID: 22493227]
[http://dx.doi.org/10.1016/0009-2614(74)80109-0]
[http://dx.doi.org/10.1002/wcms.66]
[http://dx.doi.org/10.1063/1.1462041]
[http://dx.doi.org/10.1103/PhysRevA.38.3098] [PMID: 9900728]
[http://dx.doi.org/10.1103/PhysRevB.37.785] [PMID: 9944570]
[http://dx.doi.org/10.1016/0927-0256(96)00008-0]
[http://dx.doi.org/10.1126/science.2686029] [PMID: 2686029]
[http://dx.doi.org/10.1074/jbc.271.50.31957] [PMID: 8943242]
[http://dx.doi.org/10.1021/cr00023a010]
[http://dx.doi.org/10.1002/wcms.10]
[http://dx.doi.org/10.1016/j.bpc.2018.05.010] [PMID: 29906639]
[http://dx.doi.org/10.1517/17460441.2016.1146250] [PMID: 26814169]
[http://dx.doi.org/10.2174/1386207319666160927111347] [PMID: 27686428]
[http://dx.doi.org/10.1021/ja044608+] [PMID: 15771507]
[http://dx.doi.org/10.1021/cb300631k] [PMID: 23259601]
[http://dx.doi.org/10.1021/ja209391n] [PMID: 22059645]
[http://dx.doi.org/10.1073/pnas.1111202108] [PMID: 22158985]
[http://dx.doi.org/10.1021/bi00197a040] [PMID: 8049236]
[http://dx.doi.org/10.1063/1.462066]
[http://dx.doi.org/10.1021/bi700822g] [PMID: 18052235]
[http://dx.doi.org/10.1021/bi3008092] [PMID: 22963370]
[http://dx.doi.org/10.1016/S0969-2126(99)80033-1] [PMID: 10368306]
[http://dx.doi.org/10.1139/v92-079]
[http://dx.doi.org/10.1021/ja00523a008]
[http://dx.doi.org/10.1021/ja00374a017]
[http://dx.doi.org/10.1063/1.1672392]
[http://dx.doi.org/10.1063/1.432189]
[http://dx.doi.org/10.1002/jcc.10349] [PMID: 14531054]
[http://dx.doi.org/10.1021/ja00316a007]
[http://dx.doi.org/10.1006/abbi.2000.2011] [PMID: 11051090]
[http://dx.doi.org/10.1016/S0166-1280(01)00672-8]
[http://dx.doi.org/10.1016/j.theochem.2003.11.011]
[http://dx.doi.org/10.1016/j.theochem.2006.03.037]
[http://dx.doi.org/10.1016/j.comptc.2012.02.011]
[http://dx.doi.org/10.1039/C5OB01565K] [PMID: 26289381]
[http://dx.doi.org/10.1007/s00894-016-3084-z] [PMID: 27604278]
[http://dx.doi.org/10.1016/j.molstruc.2016.08.049]
[http://dx.doi.org/10.1021/bi9612733] [PMID: 8841139]
[http://dx.doi.org/10.1073/pnas.0605809103] [PMID: 17116869]
[http://dx.doi.org/10.1107/S0907444998003254] [PMID: 9757107]
[http://dx.doi.org/10.1002/prot.22174] [PMID: 18704947]
[http://dx.doi.org/10.1016/S0006-291X(02)00482-5] [PMID: 12051725]
[http://dx.doi.org/10.1371/journal.pone.0007860] [PMID: 19924250]
[http://dx.doi.org/10.1021/ja100002b] [PMID: 20397633]
[http://dx.doi.org/10.1107/S0567740879006282]
[http://dx.doi.org/10.1021/ja2095766]
[http://dx.doi.org/10.1021/acs.jctc.7b00768] [PMID: 28992703]
[http://dx.doi.org/10.1021/jm901165g] [PMID: 19961222]
[http://dx.doi.org/10.1016/j.cpc.2008.01.032]
[http://dx.doi.org/10.1021/jp962071j]
[http://dx.doi.org/10.1021/cr5004419] [PMID: 25853797]
[http://dx.doi.org/10.1021/bi00220a023] [PMID: 1993177]
[http://dx.doi.org/10.1021/ja962612i]
[http://dx.doi.org/10.1021/ja0299203] [PMID: 12769565]
[http://dx.doi.org/10.1021/jm8004543] [PMID: 18783203]
[http://dx.doi.org/10.1111/j.1742-4658.2010.07771.x] [PMID: 20695887]