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Current Stem Cell Research & Therapy

Editor-in-Chief

ISSN (Print): 1574-888X
ISSN (Online): 2212-3946

Research Article

Label-free Quantitative Proteomic Analysis of Ascorbic Acid-induced Differentially Expressed Osteoblast-related Proteins in Dental Pulp Stem Cells from Deciduous and Permanent Teeth

Author(s): Intan Zarina Zainol Abidin, Thanaletchumi Manogaran, Rohaya Megat Abdul Wahab, Saiful Anuar Karsani, Muhammad Dain Yazid, Farinawati Yazid, Zaidah Zainal Ariffin, Anis Nabilah Johari and Shahrul Hisham Zainal Ariffin*

Volume 18, Issue 3, 2023

Published on: 26 August, 2022

Page: [417 - 428] Pages: 12

DOI: 10.2174/1574888X17666220627145424

Price: $65

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Abstract

Background: Proteomic is capable of elucidating complex biological systems through protein expression, function, and interaction under a particular condition.

Objective: This study aimed to determine the potential of ascorbic acid alone in inducing differentially expressed osteoblast-related proteins in dental stem cells via the liquid chromatography-mass spectrometry/ mass spectrometry (LC-MS/MS) approach.

Methods: The cells were isolated from deciduous (SHED) and permanent teeth (DPSC) and induced with 10 μg/mL of ascorbic acid. Bone mineralisation and osteoblast gene expression were determined using von Kossa staining and reverse transcriptase-polymerase chain reaction. The label-free protein samples were harvested on days 7 and 21, followed by protein identification and quantification using LC-MS/MS. Based on the similar protein expressed throughout treatment and controls for SHED and DPSC, overall biological processes followed by osteoblast-related protein abundance were determined using the PANTHER database. STRING database was performed to determine differentially expressed proteins as candidates for SHED and DPSC during osteoblast development.

Results: Both cells indicated brownish mineral stain and expression of osteoblast-related genes on day 21. Overall, a total of 700 proteins were similar among all treatments on days 7 and 21, with 482 proteins appearing in the PANTHER database. Osteoblast-related protein abundance indicated 31 and 14 proteins related to SHED and DPSC, respectively. Further analysis by the STRING database identified only 22 and 11 proteins from the respective group. Differential expressed analysis of similar proteins from these two groups revealed ACTN4 and ACTN1 as proteins involved in both SHED and DPSC. In addition, three (PSMD11/RPN11, PLS3, and CLIC1) and one (SYNCRIP) protein were differentially expressed specifically for SHED and DPSC, respectively.

Conclusion: Proteome differential expression showed that ascorbic acid alone could induce osteoblastrelated proteins in SHED and DPSC and generate specific differentially expressed protein markers.

Keywords: SHED, DPSC, osteoblast, differentiation, ascorbic acid, proteomic.

[1]
Busra FM, Lokanathan Y, Nadzir MM, Saim A, Idrus RBH, Chowdhury SR. Attachment, proliferation, and morphological properties of human dermal fibroblasts on ovine tendon collagen scaffolds: A comparative study. Malays J Med Sci 2017; 24(2): 33-43.
[http://dx.doi.org/10.21315/mjms2016.24.2.5] [PMID: 28894402]
[2]
Huebsch N, Lippens E, Lee K, et al. Matrix elasticity of void-forming hydrogels controls transplanted-stem-cell-mediated bone formation. Nat Mater 2015; 14(12): 1269-77.
[http://dx.doi.org/10.1038/nmat4407] [PMID: 26366848]
[3]
Kaigler D, Avila-Ortiz G, Travan S, et al. Bone engineering of maxillary sinus bone deficiencies using enriched CD90+ stem cell therapy: A randomized clinical trial. J Bone Miner Res 2015; 30(7): 1206-16.
[http://dx.doi.org/10.1002/jbmr.2464] [PMID: 25652112]
[4]
Zhang S, Chu WC, Lai RC, Lim SK, Hui JH, Toh WS. Exosomes derived from human embryonic mesenchymal stem cells promote osteochondral regeneration. Osteoarthritis Cartilage 2016; 24(12): 2135-40.
[http://dx.doi.org/10.1016/j.joca.2016.06.022] [PMID: 27390028]
[5]
Hasmad H, Yusof MR, Mohd Razi ZR, Hj Idrus RB, Chowdhury SR. Human amniotic membrane with aligned electrospun fiber as scaffold for aligned tissue regeneration. Tissue Eng Part C Methods 2018; 24(6): 368-78.
[http://dx.doi.org/10.1089/ten.tec.2017.0447] [PMID: 29690856]
[6]
Shamsul BS, Chowdhury SR, Ruszymah BHI, Nor Hamdan BMY. Effects of PLGA nanofibre on osteoarthritic chondrocytes. Sains Malays 2018; 47(10): 2325-36.
[http://dx.doi.org/10.17576/jsm-2018-4710-09]
[7]
Shanmuganantha L, Azmi B, Abdul HAR, Nor Hazla MH, Sabaru AM, Ruszymah BHI. Role of titanium-wollastonite in promoting mesenchymal stem cells growth. Regen Res 2018; 7(1): 28.
[8]
Zahari NK, Idrus RBH, Chowdhury SR. Laminin-coated poly(methyl methacrylate) (PMMA) nanofiber scaffold facilitates the enrichment of skeletal muscle myoblast population. Int J Mol Sci 2017; 18(11): E2242.
[http://dx.doi.org/10.3390/ijms18112242] [PMID: 29084180]
[9]
Intan Zarina ZA, Shahrul Hisham ZA, Rohaya MAW, Sahidan S, Zaidah ZA. Osteoclast and osteoblast development of Mus musculus haemopoietic mononucleated cells. J Biol Sci (Faisalabad, Pak) 2008; 8(3): 506-16.
[http://dx.doi.org/10.3923/jbs.2008.506.516]
[10]
Megat Abdul Wahab R, Mohamed Rozali NA, Senafi S, Zainol Abidin IZ, Zainal Ariffin Z, Zainal Ariffin SH. Impact of isolation method on doubling time and the quality of chondrocyte and osteoblast differentiated from murine dental pulp stem cells. PeerJ 2017; 5: e3180.
[http://dx.doi.org/10.7717/peerj.3180] [PMID: 28626603]
[11]
Ariffin SH, Abidin IZ, Yazid MD, Wahab RM. Differentiation analyses of adult suspension mononucleated peripheral blood cells of Mus musculus. Cell Commun Signal 2010; 8(1): 29.
[http://dx.doi.org/10.1186/1478-811X-8-29] [PMID: 20969794]
[12]
Yazid MD, Ariffin SHZ, Senafi S, Razak MA, Wahab RMA. Determination of the differentiation capacities of murines’ primary mononucleated cells and MC3T3-E1 cells. Cancer Cell Int 2010; 10(1): 42.
[http://dx.doi.org/10.1186/1475-2867-10-42] [PMID: 20979664]
[13]
Orriss IR, Burnstock G, Arnett TR. Purinergic signalling and bone remodelling. Curr Opin Pharmacol 2010; 10(3): 322-30.
[http://dx.doi.org/10.1016/j.coph.2010.01.003] [PMID: 20189453]
[14]
Coelho MJ, Fernandes MH. Human bone cell cultures in biocompatibility testing. Part II: Effect of ascorbic acid, beta-glycerophosphate and dexamethasone on osteoblastic differentiation. Biomaterials 2000; 21(11): 1095-102.
[http://dx.doi.org/10.1016/S0142-9612(99)00192-1] [PMID: 10817261]
[15]
Orriss IR, Hajjawi MO, Huesa C, MacRae VE, Arnett TR. Optimisation of the differing conditions required for bone formation in vitro by primary osteoblasts from mice and rats. Int J Mol Med 2014; 34(5): 1201-8.
[http://dx.doi.org/10.3892/ijmm.2014.1926] [PMID: 25200658]
[16]
Gupta A, Ahmad I, Kureel J, et al. Differentiation of skeletal osteogenic progenitor cells to osteoblasts with 3,4-diarylbenzopyran based amide derivatives: Novel osteogenic agents. Eur J Med Chem 2016; 121: 82-99.
[http://dx.doi.org/10.1016/j.ejmech.2016.05.023] [PMID: 27236065]
[17]
Ruzanna AK, Shahrul Hisham ZA, Rohaya MAW, Sahidan S, Fahrul Zaman H. Differentiation potential of human suspension mononucleated peripheral blood cells. Afr J Biotechnol 2011; 10(52): 10756-64.
[http://dx.doi.org/10.5897/AJB11.436]
[18]
Catacchio I, Berardi S, Reale A, et al. Evidence for bone marrow adult stem cell plasticity: Properties, molecular mechanisms, negative aspects, and clinical applications of hematopoietic and mesenchymal stem cells transdifferentiation. Stem Cells Int 2013; 2013: 589139.
[http://dx.doi.org/10.1155/2013/589139] [PMID: 23606860]
[19]
Tatullo M, Codispoti B, Pacifici A, et al. Potential use of human periapical cyst-mesenchymal stem cells (hPCy-MSCs) as a novel stem cell source for regenerative medicine applications. Front Cell Dev Biol 2017; 5: 103.
[http://dx.doi.org/10.3389/fcell.2017.00103] [PMID: 29259970]
[20]
Nahás-Scocate ACR, de Moraes GFA, Nader HB, Vicente CM, Toma L. Analysis of proteoglycan expression in human dental pulp. Arch Oral Biol 2018; 90: 67-73.
[http://dx.doi.org/10.1016/j.archoralbio.2018.03.003] [PMID: 29567548]
[21]
Listik E, Azevedo Marques Gaschler J, Matias M, Neuppmann Feres MF, Toma L, Raphaelli Nahás-Scocate AC. Proteoglycans and dental biology: The first review. Carbohydr Polym 2019; 225: 115199.
[http://dx.doi.org/10.1016/j.carbpol.2019.115199] [PMID: 31521317]
[22]
Yazid FB, Gnanasegaran N, Kunasekaran W, Govindasamy V, Musa S. Comparison of immunodulatory properties of dental pulp stem cells derived from healthy and inflamed teeth. Clin Oral Investig 2014; 18(9): 2103-12.
[http://dx.doi.org/10.1007/s00784-014-1207-4] [PMID: 24549764]
[23]
Bian Y, Zheng R, Bayer FP, et al. Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS. Nat Commun 2020; 11(1): 157.
[http://dx.doi.org/10.1038/s41467-019-13973-x] [PMID: 31919466]
[24]
Chang L, Ni J, Beretov J, et al. Identification of protein biomarkers and signaling pathways associated with prostate cancer radioresistance using label-free LC-MS/MS proteomic approach. Sci Rep 2017; 7(1): 41834.
[http://dx.doi.org/10.1038/srep41834] [PMID: 28225015]
[25]
UniProt Consortium UniProt: A worldwide hub of protein knowledge. Nucleic Acids Res 2019; 47(D1): D506-15.
[http://dx.doi.org/10.1093/nar/gky1049] [PMID: 30395287]
[26]
Wang YH, Liu Y, Maye P, Rowe DW. Examination of mineralized nodule formation in living osteoblastic cultures using fluorescent dyes. Biotechnol Prog 2006; 22(6): 1697-701.
[http://dx.doi.org/10.1002/bp060274b] [PMID: 17137320]
[27]
Seo J, Lee KJ. Post-translational modifications and their biological functions: Proteomic analysis and systematic approaches. J Biochem Mol Biol 2004; 37(1): 35-44.
[PMID: 14761301]
[28]
von Mering C, Krause R, Snel B, et al. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002; 417(6887): 399-403.
[http://dx.doi.org/10.1038/nature750] [PMID: 12000970]
[29]
Berggård T, Linse S, James P. Methods for the detection and analysis of protein-protein interactions. Proteomics 2007; 7(16): 2833-42.
[http://dx.doi.org/10.1002/pmic.200700131] [PMID: 17640003]
[30]
Madda R, Chen C-M, Wang J-Y, et al. Proteomic profiling and identification of significant markers from high-grade osteosarcoma after cryotherapy and irradiation. Sci Rep 2020; 10(1): 2105.
[http://dx.doi.org/10.1038/s41598-019-56024-7] [PMID: 32034162]
[31]
Dalmer TRA, Clugston RD. Gene ontology enrichment analysis of congenital diaphragmatic hernia-associated genes. Pediatr Res 2019; 85(1): 13-9.
[http://dx.doi.org/10.1038/s41390-018-0192-8] [PMID: 30287891]
[32]
Wood V, Lock A, Harris MA, Rutherford K, Bähler J, Oliver SG. Hidden in plain sight: What remains to be discovered in the eukaryotic proteome? Open Biol 2019; 9(2): 180241.
[http://dx.doi.org/10.1098/rsob.180241] [PMID: 30938578]
[33]
Chen C, Hou J, Tanner JJ, Cheng J. Bionformatics methods for mass spectrometry-based proteomics data analysis. Int J Mol Sci 2020; 21(8): 2873.
[http://dx.doi.org/10.3390/ijms21082873]
[34]
Manal NH, Farinawati Y, Nur Atmaliya L, Shahrul Hisham ZA, Rohaya MAW. Comparative evaluation of osteogenic differentiation potential of stem cells derived from dental pulp and exfoliated deciduous teeth cultured over granular hydroxyapatite based scaffold. BMC Oral Health 2021; 21(1): 1-13.
[PMID: 33388028]
[35]
Zhu H, Kimura T, Swami S, Wu JY. Pluripotent stem cells as a source of osteoblasts for bone tissue regeneration. Biomaterials 2019; 196: 31-45.
[http://dx.doi.org/10.1016/j.biomaterials.2018.02.009] [PMID: 29456164]
[36]
Viti F, Landini M, Mezzelani A, Petecchia L, Milanesi L, Scaglione S. Osteogenic differentiation of MSC through calcium signaling activation: Transcriptomics and functional analysis. PLoS One 2016; 11(2): e0148173.
[http://dx.doi.org/10.1371/journal.pone.0148173] [PMID: 26828589]
[37]
Davies OG, Cox SC, Azoidis I, et al. Osteoblast-derived vesicle protein content is temporally regulated during osteogenesis: Implications for regenerative therapies. Front Bioeng Biotechnol 2019; 7: 92.
[http://dx.doi.org/10.3389/fbioe.2019.00092] [PMID: 31119130]
[38]
Idris SB, Bolstad AI, Ibrahim SO, et al. Global gene expression profile of osteoblast-like cells grown on polyester copolymer scaffolds. Tissue Eng Part A 2011; 17(21-22): 2817-31.
[http://dx.doi.org/10.1089/ten.tea.2010.0660] [PMID: 21905880]
[39]
DeNichilo MO, Shoubridge AJ, Panagopoulos V, et al. Peroxidase enzymes regulate collagen biosynthesis and matrix mineralization by cultured human osteoblasts. Calcif Tissue Int 2016; 98(3): 294-305.
[http://dx.doi.org/10.1007/s00223-015-0090-6] [PMID: 26643175]
[40]
Khan AU, Qu R, Fan T, Ouyang J, Dai J. A glance on the role of actin in osteogenic and adipogenic differentiation of mesenchymal stem cells. Stem Cell Res Ther 2020; 11(1): 283.
[http://dx.doi.org/10.1186/s13287-020-01789-2] [PMID: 32678016]
[41]
Millán JL. The role of phosphatases in the initiation of skeletal mineralization. Calcif Tissue Int 2013; 93(4): 299-306.
[http://dx.doi.org/10.1007/s00223-012-9672-8] [PMID: 23183786]
[42]
Wang Q, Yu Q, Lin Q, Duan Y. Emerging salivary biomarkers by mass spectrometry. Clin Chim Acta 2015; 438: 214-21.
[http://dx.doi.org/10.1016/j.cca.2014.08.037] [PMID: 25195008]
[43]
Wu L, Wei X, Ling J, et al. Early osteogenic differential protein profile detected by proteomic analysis in human periodontal ligament cells. J Periodontal Res 2009; 44(5): 645-56.
[http://dx.doi.org/10.1111/j.1600-0765.2008.01174.x] [PMID: 19453858]
[44]
Mason EF, Rathmell JC. Cell metabolism: An essential link between cell growth and apoptosis. Biochim Biophys Acta 2011; 1813(4): 645-54.
[http://dx.doi.org/10.1016/j.bbamcr.2010.08.011] [PMID: 20816705]
[45]
Augello A, De Bari C. The regulation of differentiation in mesenchymal stem cells. Hum Gene Ther 2010; 21(10): 1226-38.
[http://dx.doi.org/10.1089/hum.2010.173] [PMID: 20804388]
[46]
Liu P, Cai J, Dong D, et al. Effects of SOX2 on proliferation, migration and adhesion of human dental pulp stem cells. PLoS One 2015; 10(10): e0141346.
[http://dx.doi.org/10.1371/journal.pone.0141346] [PMID: 26496354]
[47]
Lo T, Tsai CF, Shih YR, et al. Phosphoproteomic analysis of human mesenchymal stromal cells during osteogenic differentiation. J Proteome Res 2012; 11(2): 586-98.
[http://dx.doi.org/10.1021/pr200868p] [PMID: 22088210]
[48]
Pongkitwitoon S, Uzer G, Rubin J, Judex S. Cytoskeletal configuration modulates mechanically induced changes in mesenchymal stem cell osteogenesis, morphology, and stiffness. Sci Rep 2016; 6(1): 34791.
[http://dx.doi.org/10.1038/srep34791] [PMID: 27708389]
[49]
Lowe DA, Lepori-Bui N, Fomin PV, et al. Deficiency in perlecan/HSPG2 during bone development enhances osteogenesis and decreases quality of adult bone in mice. Calcif Tissue Int 2014; 95(1): 29-38.
[http://dx.doi.org/10.1007/s00223-014-9859-2] [PMID: 24798737]
[50]
Smith MA, Blankman E, Deakin NO, et al. LIM domains target actin regulators paxillin and zyxin to sites of stress fiber strain. PLoS One 2013; 8(8): e69378.
[http://dx.doi.org/10.1371/journal.pone.0069378] [PMID: 23990882]
[51]
Yang JY, Jung JY, Cho SW, et al. Chloride intracellular channel 1 regulates osteoblast differentiation. Bone 2009; 45(6): 1175-85.
[http://dx.doi.org/10.1016/j.bone.2009.08.012] [PMID: 19703605]

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