Generic placeholder image

Recent Patents on Biotechnology

Editor-in-Chief

ISSN (Print): 1872-2083
ISSN (Online): 2212-4012

Research Article

First Report of Mycovirus Infected Sclerotinia sclerotiorum in Cauliflower from Sirmaur District of Himachal Pradesh

Author(s): Tanvi Gupta, Vanshika, Chandresh Kumari and Saurabh Kulshrestha*

Volume 14, Issue 4, 2020

Page: [283 - 294] Pages: 12

DOI: 10.2174/1872208314666200806112116

Price: $65

Abstract

Background: Sclerotinia sclerotiorum is a ubiquitous fungal pathogen infecting more than 400 plant species. Sclerotinia stem rot is known to cause as high as 100% crop loss in many cases. Currently, chemical fungicides are the only known solution to this problem. Thus, there is an urgent need for developing environment-friendly alternatives for controlling this pathogen. The review of published articles revealed that a number of mycoviruses with the potential of a biocontrol agent against Sclerotinia had been identified from different parts of the world.

Objective: The present investigation describes the isolation and characterization of isolates of S. sclerotiorum infecting cauliflower, peas, and mustard for the presence of a potent mycovirus from lower Himachal region of India.

Methods: Various infected fields were visited and samples in the form of sclerotia were collected. Various isolates of S. sclerotiorum were obtained, and putative hypovirulent isolates were screened. Thereafter, hypovirulent strains were chosen and mycovirus isolation was performed. Finally, isolates showing an extra nucleic acid band were used for mycovirus isolation and further characterization. Curing of mycovirus was used to confirm if altered phenotype was due to the presence of this virus.

Results: A ssDNA mycovirus was identified and confirmed from the growth defective isolate.

Conclusion: This mycovirus can in turn act as a biocontrol agent, thus reducing dependency on chemical fungicides and can also be developed in the form of a patent once completely characterized and formulated. To our knowledge, this is the first report on mycovirus isolation from any Sclerotinia sclerotiorumisolate from India.

Keywords: Biocontrol agent, hypovirulence, Sclerotinia sclerotiorum, Sclerotinia stem rot (SSR), ssDNA, Mycovirus, Biofungicide, hypovirulence, ssDNA mycovirus, Sclerotia.

Graphical Abstract

[1]
Ghabrial SA, Suzuki N. Viruses of plant pathogenic fungi. Annu Rev Phytopathol 2009; 47: 353-84.
[http://dx.doi.org/10.1146/annurev-phyto-080508-081932] [PMID: 19400634]
[2]
Zhou T, Boland GJ. Hypovirulence and double-stranded RNA in Sclerotinia homoeocarpa. Phytopathology 1997; 87(2): 147-53.
[http://dx.doi.org/10.1094/PHYTO.1997.87.2.147] [PMID: 18945134]
[3]
Bolton MD, Thomma BP, Nelson BD. Sclerotinia sclerotiorum (Lib.) de Bary: biology and molecular traits of a cosmopolitan pathogen. Mol Plant Pathol 2006; 7(1): 1-16.
[http://dx.doi.org/10.1111/j.1364-3703.2005.00316.x] [PMID: 20507424]
[4]
Sharma P, Meena PD, Verma PR, Saharan GS, Mehta N, Singh D, et al. Sclerotinia sclerotiorum (Lib.) de Bary causing sclerotinia rot in oilseed brassicas: a review. J Oilseed Brassica 2015; 6(special): 1-44.
[5]
Chattopadhyay C, Meena PD, Sastry RK, Meena RL. Relationship among pathological and agronomic attributes for soilborne diseases of three oilseed crops. Int J Plant Prot 2003; 3: 127-8.
[6]
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, et al. Fungal barcoding consortium; fungal barcoding consortium author list. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 2012; 109(16): 6241-6.
[http://dx.doi.org/10.1073/pnas.1117018109] [PMID: 22454494]
[7]
Liu H, Fu Y, Jiang D, Li G, Xie J, Peng Y, et al. A novel mycovirus that is related to the human pathogen hepatitis E virus and rubi-like viruses. J Virol 2009; 83(4): 1981-91.
[http://dx.doi.org/10.1128/JVI.01897-08] [PMID: 19073734]
[8]
Nibert ML, Ghabrial SA, Maiss E, Lesker T, Vainio EJ, Jiang D, et al. Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research. Virus Res 2014; 188: 128-41.
[http://dx.doi.org/10.1016/j.virusres.2014.04.007] [PMID: 24768846]
[9]
Kotta-Loizou I, Coutts RHA. Mycoviruses in aspergilli: a comprehensive review. Front Microbiol 2017; 8: 1699.
[http://dx.doi.org/10.3389/fmicb.2017.01699] [PMID: 28932216]
[10]
Pandey B, Naidu RA, Grove GG. Detection and analysis of mycovirus-related RNA viruses from grape powdery mildew fungus Erysiphe necator. Arch Virol 2018; 163(4): 1019-30.
[http://dx.doi.org/10.1007/s00705-018-3714-0] [PMID: 29356991]
[11]
Li GQ, Huang HC, Laroche A, Acharya SN. Occurrence and characterization of hypovirulence in the tan sclerotial isolate S10 of Sclerotinia sclerotiorum. Mycol Res 2003; 107(Pt 11): 1350-60.
[http://dx.doi.org/10.1017/S0953756203008591] [PMID: 15000237]
[12]
Chen B, Gil Ho Choi GH, Donald Lee Nuss DL. Inventors; Hoffmann-La Roche Inc., Nutley, N.J, original assignee. Attenuation of fungal virulence by synthetic infectious mycovirus transcripts. US Patent US5665581A 1997.
[13]
Moriyama H, Fukuhara T, Arie T, Teraoka T. Mycovirus attenuated strain of phytopathogenic fungus, plant disease controlling agent, method of producing mycovirus, method of attenuating phytopathogenic fungus and method of controlling plant disease. US Patent 8187609 B2, 2012.
[14]
Pengfei L, Bhattacharjee P, Wang S, Zhang L, Ahmed I, Guo L. mycoviruses in fusarium species: an update front. Cell Infect Microbiol 2019; 9: 00257.
[15]
Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, et al. Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J Gen Virol 2006; 87(Pt 1): 241-9.
[http://dx.doi.org/10.1099/vir.0.81522-0] [PMID: 16361437]
[16]
Zhang L, Fu Y, Xie J, Jiang D, Li G, Yi X. A novel virus that infecting hypovirulent strain XG36-1 of plant fungal pathogen Sclerotinia sclerotiorum. Virol J 2009; 6: 96.
[http://dx.doi.org/10.1186/1743-422X-6-96] [PMID: 19583873]
[17]
Xie J, Xiao X, Fu Y, Liu H, Cheng J, Ghabrial SA, et al. A novel mycovirus closely related to hypoviruses that infects the plant pathogenic fungus Sclerotinia sclerotiorum. Virology 2011; 418(1): 49-56.
[http://dx.doi.org/10.1016/j.virol.2011.07.008] [PMID: 21813149]
[18]
Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, et al. Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J Gen Virol 2006; 87(Pt 1): 241-9.
[http://dx.doi.org/10.1099/vir.0.81522-0] [PMID: 16361437]
[19]
Xie J, Ghabrial SA. Molecular characterization of two mitoviruses co-infecting a hypovirulent isolate of the plant pathogenic fungus Sclerotinia sclerotiorum. Virology 2012; 428(2): 77-85.
[http://dx.doi.org/10.1016/j.virol.2012.03.015] [PMID: 22520836]
[20]
Liu L, Wang Q, Cheng J, Fu Y, Jiang D, Xie J. Molecular characterization of a bipartite double-stranded RNA virus and its satellite-like RNA co-infecting the phytopathogenic fungus Sclerotinia sclerotiorum. Front Microbiol 2015; 6: 406.
[http://dx.doi.org/10.3389/fmicb.2015.00406] [PMID: 25999933]
[21]
Hamid MR, Xie J, Wu S, Maria SK, Zheng D, Assane Hamidou A, et al. A novel Deltaflexivirus that infects the plant fungal pathogen, Sclerotinia sclerotiorum, can be transmitted among host vegetative incompatible strains. Viruses 2018; 10(6): 295.
[http://dx.doi.org/10.3390/v10060295] [PMID: 29857477]
[22]
Gupta T, Kumari C. Vanshika, Kulshrestha S. Biology and mycovirus-assisted biological control of Sclerotinia sclerotiorum infecting vegetable and oilseed crops. Arch Phytopathol Pflanzenschutz 2019; 52(13-14): 1049-67.
[http://dx.doi.org/10.1080/03235408.2019.1688913]]
[23]
Yu X, Li B, Fu Y, Jiang D, Ghabrial SA, Li G, et al. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc Natl Acad Sci USA 2010; 107(18): 8387-92.
[http://dx.doi.org/10.1073/pnas.0913535107] [PMID: 20404139]
[24]
Luplertlop N, Suwanmanee S, Pumeesat P, Ampawong S. In vitro characterization of Chrysovirus 1-induced hypovirulence of Bipolaris maydis Walailak J. Sci Tech 2020; 18(1)
[25]
Peres AP, Nasser LCB, Machado JC. Use of semi-selective media for detection of Sclerotinia sclerotiorum on bean and soybean seeds. Fitopatol Bras 2002; 27: 123-7.
[http://dx.doi.org/10.1590/S0100-41582002000200001]
[26]
Kapatia A, Gupta T, Sharma M, Khan A, Kulshrestha S. Isolation and analysis of genetic diversity amongst Sclerotinia sclerotiorum isolates infecting cauliflower and pea. Int J Biotechnol 2016; 15: 589-95.
[27]
Peres AP, Nasser LCB, Machado JC. Use of semi-selective media for detection of Sclerotinia sclerotiorum on bean and soybean seeds. Fitopatol Bras 2002; 27: 123-7.
[http://dx.doi.org/10.1590/S0100-41582002000200001]
[28]
DePaulo JJ, Powell CA. Extraction of Double-Stranded RNA from plant tissues without the use of organic solvents. Plant Dis 1995; 79(3): 246-8.
[http://dx.doi.org/10.1094/PD-79-0246]
[29]
Sambrook J, Fritsch EF, Maniatis T. Molecular cloning. A laboratory manual. Cold Spring Harbor, New York, USA: Cold Spring Harbor Laboratory Press 1989; Vol. 2: p: 1626.
[30]
Peyambari M, Habibi MK, Fotouhifar KB, Dizadji A, Roossinck MJ. Molecular characterization of a novel putative partitivirus infecting Cytospora sacchari, a plant pathogenic fungus. Plant Pathol J 2014; 30(2): 151-8.
[http://dx.doi.org/10.5423/PPJ.OA.01.2014.0005] [PMID: 25288997]
[31]
Saharan GS, Mehta N. Economic importance Sclerotinia diseases of crop plants: biology, ecology and disease management. Heidelberg: Springer 2008; pp. 41-5.
[http://dx.doi.org/10.1007/978-1-4020-8408-9_4]
[32]
Zhou T, Boland GJ. Hypovirulence and double-stranded RNA in Sclerotinia homoeocarpa. Phytopathology 1997; 87(2): 147-53.
[http://dx.doi.org/10.1094/PHYTO.1997.87.2.147] [PMID: 18945134]
[33]
Bazzicalupo AL, Balint M, Schmitt I. Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities. Fungal Ecol 2013; 6: 102-9.
[http://dx.doi.org/10.1016/j.funeco.2012.09.003]
[34]
Ejmal MA, Holland DJ, MacDiarmid RM, Pearson MN. A novel chrysovirus from a clinical isolate of Aspergillus thermomutatus affects sporulation. PLoS One 2018; 13(12)e0209443
[http://dx.doi.org/10.1371/journal.pone.0209443] [PMID: 30571748]
[35]
AMRiN. Occurrence Record: WAC-WAC9462 Monilinia. Western Australia: Department of Agriculture and Food 2015. http://amrin.ala.org.au/occurences/e656aaee-e0c44330ab2deb15023f876a

Rights & Permissions Print Cite
© 2024 Bentham Science Publishers | Privacy Policy