摘要
背景:核磁共振光谱是从动态角度研究肽和蛋白质的结构和相互作用特性的最强大的工具之一。了解肽的生物活性构象对于设计更有效的类似物配体和靶向治疗相关系统的蛋白质-蛋白质相互作用抑制剂至关重要。 目的:这篇综述提供了一个通过 NMR 研究肽构象特性的工具包。 方法:本文引用的与肽和蛋白质的 NMR 研究相关的文章主要通过 PubMed 和网络进行搜索。还查阅了该领域著名科学家撰写的有关核磁共振波谱的较新和旧书籍。 结果:审查主要集中在核磁共振工具上,以获得未标记的小肽的 3D 结构。它更加面向应用,因为它超出了提供深刻理论背景的目标。但是,简要描述了二维同核和异核实验的基本原理。还讨论了获得同位素标记肽的方案和研究它们所需的主要三重共振实验。 结论: NMR 是研究小柔性肽的构象偏好的领先技术,其结构通常只能由一组构象来描述。虽然肽的核磁共振研究可以通过几十年前建立的规范协议轻松快速地进行,但最近我们已经协助核磁共振光谱的巨大改进,以研究大型系统并克服其分子量限制。
关键词: 核磁共振、结构生物学、肽、蛋白质、构象集合、距离和角度限制、生物活性构象。
[http://dx.doi.org/10.1038/s41467-019-10490-9] [PMID: 31217444]
[http://dx.doi.org/10.3390/biom9080370] [PMID: 31416261]
[http://dx.doi.org/10.1016/j.tips.2004.10.011] [PMID: 15629199]
[http://dx.doi.org/10.1021/ja030153x] [PMID: 12926967]
[http://dx.doi.org/10.1021/ja039732s] [PMID: 15080697]
[http://dx.doi.org/10.1016/j.pnmrs.2016.02.001] [PMID: 27110043]
[http://dx.doi.org/10.1016/j.jmr.2015.01.003] [PMID: 25797003]
[http://dx.doi.org/10.2174/156802611793611878] [PMID: 20809894]
[http://dx.doi.org/10.1146/annurev.bb.25.060196.001115] [PMID: 8800468]
[http://dx.doi.org/10.1038/s41592-019-0334-x] [PMID: 30858598]
[http://dx.doi.org/10.1002/cbic.200300597] [PMID: 12851935]
[http://dx.doi.org/10.1038/nrd.2018.77] [PMID: 29880918]
[http://dx.doi.org/10.1016/j.bmc.2017.06.052] [PMID: 28720325]
[http://dx.doi.org/10.1007/BF02740822] [PMID: 9219245]
[http://dx.doi.org/10.1016/j.jpba.2014.06.012] [PMID: 25044089]
[http://dx.doi.org/10.1016/B978-008045382-8.00653-5]
[http://dx.doi.org/10.1007/BF00211777] [PMID: 8589602]
[http://dx.doi.org/10.2174/1389203720666190214152439] [PMID: 30767740]
[http://dx.doi.org/10.1385/0-89603-274-4:131] [PMID: 7697108]
[http://dx.doi.org/10.1016/0076-6879(89)76005-5] [PMID: 2811699]
[http://dx.doi.org/10.1021/ac00121a034] [PMID: 3752509]
[http://dx.doi.org/10.1006/jmre.1998.1405] [PMID: 9469907]
[http://dx.doi.org/10.1006/jmra.1995.1047]
[http://dx.doi.org/10.1038/nrd748] [PMID: 12120505]
[http://dx.doi.org/10.1016/S0968-0004(00)01665-0] [PMID: 11050425]
[http://dx.doi.org/10.1023/A:1023887412387] [PMID: 12766417]
[http://dx.doi.org/10.1016/j.pep.2006.01.022] [PMID: 16584890]
[http://dx.doi.org/10.1016/j.pep.2008.11.007] [PMID: 19063971]
[http://dx.doi.org/10.1016/j.pep.2010.06.014] [PMID: 20600945]
[http://dx.doi.org/10.1039/c0mb00105h] [PMID: 20953501]
[http://dx.doi.org/10.1016/j.peptides.2018.09.004] [PMID: 30243923]
[http://dx.doi.org/10.1002/cbic.201900444] [PMID: 31538690]
[http://dx.doi.org/10.1021/acs.biochem.5b01345] [PMID: 26909491]
[http://dx.doi.org/10.1038/srep26638] [PMID: 27220817]
[http://dx.doi.org/10.1016/j.pep.2019.105521] [PMID: 31654735]
[http://dx.doi.org/10.1051/epn/19861701011]
[http://dx.doi.org/10.1021/ja00388a062]
[http://dx.doi.org/10.1021/ja00231a044]
[http://dx.doi.org/10.1016/0006-291X(80)90695-6] [PMID: 7417242]
[http://dx.doi.org/10.1016/0022-2364(85)90171-4]
[http://dx.doi.org/10.1016/B978-0-12-411589-7.00007-3]
[http://dx.doi.org/10.1016/B0-12-369397-7/00412-X]
[http://dx.doi.org/10.1002/cmr.a.10095]
[http://dx.doi.org/10.1006/jmra.1993.1005] [PMID: 26298081]
[http://dx.doi.org/10.1017/S0033583500003619] [PMID: 11131563]
[http://dx.doi.org/10.1007/s10858-005-4425-x] [PMID: 16341750]
[http://dx.doi.org/10.1021/ja051306e] [PMID: 15926816]
[http://dx.doi.org/10.1007/BF02789290] [PMID: 7866869]
[http://dx.doi.org/10.1007/978-1-0716-0270-6_14] [PMID: 32006287]
[http://dx.doi.org/10.1093/nar/gkm957] [PMID: 17984079]
[http://dx.doi.org/10.1002/cbic.201500197] [PMID: 26120079]
[http://dx.doi.org/10.1385/1-59259-809-9:353] [PMID: 15318003]
[http://dx.doi.org/10.1016/B978-0-12-374920-8.00113-2]
[http://dx.doi.org/10.1007/BF00208809] [PMID: 7703701]
[http://dx.doi.org/10.1093/nar/gks400] [PMID: 22661580]
[http://dx.doi.org/10.1385/1-59259-584-7:531] [PMID: 10027275]
[http://dx.doi.org/10.1002/bip.22512] [PMID: 24889333]
[http://dx.doi.org/10.1021/ja00070a024]
[http://dx.doi.org/10.1016/0022-2364(91)90182-S]
[http://dx.doi.org/10.1023/A:1018393225804] [PMID: 20700833]
[http://dx.doi.org/10.1186/1472-6807-9-59] [PMID: 19765305]
[http://dx.doi.org/10.1007/BF02192854] [PMID: 1283353]
[http://dx.doi.org/10.1021/bi801713f] [PMID: 18991394]
[http://dx.doi.org/10.1021/bi300141h] [PMID: 22332920]
[http://dx.doi.org/10.1007/BF00178261] [PMID: 8477186]
[http://dx.doi.org/10.1073/pnas.0504818102] [PMID: 16043707]
[http://dx.doi.org/10.1007/128_2011_189] [PMID: 21710379]
[http://dx.doi.org/10.1007/s10858-018-0167-4] [PMID: 29492731]
[http://dx.doi.org/10.1021/bi00121a010] [PMID: 1737021]
[http://dx.doi.org/10.1023/A:1018334207887] [PMID: 9255942]
[http://dx.doi.org/10.1002/pro.3785] [PMID: 31730280]
[http://dx.doi.org/10.1007/BF00198143] [PMID: 8810526]
[http://dx.doi.org/10.1007/s10858-014-9857-8] [PMID: 25173410]
[http://dx.doi.org/10.1038/srep33690] [PMID: 27654858]
[http://dx.doi.org/10.1021/jp808501x] [PMID: 19256533]
[http://dx.doi.org/10.1021/ja063606h] [PMID: 17031964]
[http://dx.doi.org/10.1007/s00249-014-0965-x] [PMID: 24824112]
[http://dx.doi.org/10.1093/nar/gkv494] [PMID: 25979265]
[http://dx.doi.org/10.1007/978-3-642-16712-6_317]
[http://dx.doi.org/10.1007/s10858-014-9863-x] [PMID: 25273503]
[http://dx.doi.org/10.1002/bip.360221211] [PMID: 6667333]
[http://dx.doi.org/10.1006/jmbi.1999.3091] [PMID: 10493868]
[http://dx.doi.org/10.1007/s10858-007-9208-0] [PMID: 17985196]
[http://dx.doi.org/10.1139/o98-038] [PMID: 9923684]
[http://dx.doi.org/10.1021/ja026811f] [PMID: 12440906]
[http://dx.doi.org/10.1021/ja003760i] [PMID: 11457007]
[http://dx.doi.org/10.1007/s10858-013-9741-y] [PMID: 23728592]
[http://dx.doi.org/10.1021/ja054842f] [PMID: 16248604]
[http://dx.doi.org/10.1021/ja407509z] [PMID: 24032347]
[http://dx.doi.org/10.1007/BF00175245] [PMID: 8019132]
[http://dx.doi.org/10.1016/0022-2836(91)90214-Q] [PMID: 1960729]
[http://dx.doi.org/10.1007/s10858-011-9508-2] [PMID: 21604143]
[http://dx.doi.org/10.1007/s10858-011-9472-x] [PMID: 21234644]
[http://dx.doi.org/10.1007/s10858-012-9666-x] [PMID: 22960996]
[http://dx.doi.org/10.1016/j.bioorg.2018.07.013] [PMID: 30036816]
[http://dx.doi.org/10.1038/s41598-017-17684-5] [PMID: 29234063]
[http://dx.doi.org/10.1016/j.peptides.2013.08.013] [PMID: 23973967]
[http://dx.doi.org/10.1023/A:1019854626147] [PMID: 12238590]
[http://dx.doi.org/10.2174/157016306778108884] [PMID: 16925517]
[http://dx.doi.org/10.1016/0022-2836(84)90034-2] [PMID: 6084719]
[http://dx.doi.org/10.1016/j.jmr.2009.10.007] [PMID: 19896874]
[http://dx.doi.org/10.1038/nrd2606] [PMID: 19172689]
[PMID: 11727313]
[http://dx.doi.org/10.1073/pnas.0603460103] [PMID: 16891420]
[http://dx.doi.org/10.1002/chem.200500636] [PMID: 16121405]
[http://dx.doi.org/10.1021/jm200826s] [PMID: 21797225]
[http://dx.doi.org/10.1021/acs.biochem.5b01133] [PMID: 26849066]
[http://dx.doi.org/10.1007/s10858-012-9689-3] [PMID: 23202986]
[http://dx.doi.org/10.1038/s41598-017-00777-6] [PMID: 28386062]
[http://dx.doi.org/10.1073/pnas.1417611111] [PMID: 25416591]
[http://dx.doi.org/10.1021/ja054040k] [PMID: 16433528]
[http://dx.doi.org/10.1002/(SICI)1097-0282(200001)53:1<84:AID-BIP8>3.0.CO;2-W] [PMID: 10644953]
[http://dx.doi.org/10.1046/j.1432-1327.1999.00641.x] [PMID: 10491093]
[http://dx.doi.org/10.1007/BF00227466] [PMID: 7881270]
[http://dx.doi.org/10.1007/BF02443552]
[http://dx.doi.org/10.1371/journal.pone.0056467] [PMID: 23457571]
[http://dx.doi.org/10.1021/bi00088a012] [PMID: 7690587]
[http://dx.doi.org/10.1016/S0022-2836(83)80185-5] [PMID: 6312052]
[http://dx.doi.org/10.1016/S0022-2836(83)80184-3] [PMID: 6312051]
[http://dx.doi.org/10.1111/j.1742-4658.2011.08215.x] [PMID: 21668648]
[http://dx.doi.org/10.1021/bi048292u] [PMID: 15766273]
[http://dx.doi.org/10.1021/bi050467s] [PMID: 16128582]
[http://dx.doi.org/10.1021/ol402637d] [PMID: 24090306]
[http://dx.doi.org/10.1021/bi036261d] [PMID: 15147188]
[http://dx.doi.org/10.1021/ja9535524]
[http://dx.doi.org/10.1016/0022-2836(84)90035-4] [PMID: 6084720]
[http://dx.doi.org/10.1023/A:1018315729609] [PMID: 9460242]
[http://dx.doi.org/10.1006/jmre.1999.1845] [PMID: 10527750]
[http://dx.doi.org/10.1016/0022-2364(92)90209-P]
[http://dx.doi.org/10.1002/cphc.200900501] [PMID: 20162655]
[http://dx.doi.org/10.1093/nar/gkl341] [PMID: 16845087]
[http://dx.doi.org/10.1007/978-1-4939-2239-0_2] [PMID: 25502373]
[http://dx.doi.org/10.1007/s10858-009-9333-z] [PMID: 19548092]
[http://dx.doi.org/10.1007/128_2011_215] [PMID: 21952837]
[http://dx.doi.org/10.1017/S0033583500003656] [PMID: 11233409]
[http://dx.doi.org/10.1016/S0076-6879(01)39313-8] [PMID: 11462810]
[http://dx.doi.org/10.1016/S0076-6879(05)94007-X] [PMID: 15808221]
[http://dx.doi.org/10.1021/cr040429z] [PMID: 16683751]
[http://dx.doi.org/10.1023/A:1008302110884] [PMID: 9835051]
[http://dx.doi.org/10.1038/nprot.2008.36] [PMID: 18388951]
[http://dx.doi.org/10.1016/j.jmr.2003.12.012] [PMID: 15040978]
[http://dx.doi.org/10.1016/S0022-2836(02)00745-3] [PMID: 12217702]
[http://dx.doi.org/10.1021/acs.joc.8b02811] [PMID: 30605335]
[http://dx.doi.org/10.1021/ja00034a071]
[http://dx.doi.org/10.1039/C5SC00670H] [PMID: 29142693]
[http://dx.doi.org/10.1002/(SICI)1099-0534(1997)9:5<299:AID-CMR2>3.0.CO;2-U]
[http://dx.doi.org/10.1016/j.jmr.2006.12.004] [PMID: 17188920]
[http://dx.doi.org/10.1023/A:1008382624724] [PMID: 10723990]
[http://dx.doi.org/10.1021/jp506678f] [PMID: 25184622]
[http://dx.doi.org/10.1021/jp8094424] [PMID: 19173563]
[http://dx.doi.org/10.1021/bi991765q] [PMID: 10600103]
[http://dx.doi.org/10.1002/prot.22789] [PMID: 20607854]
[http://dx.doi.org/10.1016/j.bmc.2017.10.001] [PMID: 29074350]
[http://dx.doi.org/10.1021/acs.joc.7b01116] [PMID: 28661686]
[PMID: 3296768]
[http://dx.doi.org/10.1002/bip.22215] [PMID: 23712491]
[http://dx.doi.org/10.1002/chem.201805353] [PMID: 30548937]
[http://dx.doi.org/10.1002/psc.3143] [PMID: 30575201]
[http://dx.doi.org/10.1002/(SICI)1521-3773(19990614)38:12<1784:AID-ANIE1784>3.0.CO;2-Q] [PMID: 29711196]
[http://dx.doi.org/10.1002/cphc.201701253] [PMID: 29314603]
[http://dx.doi.org/10.1021/ja0100120] [PMID: 11414845]
[http://dx.doi.org/10.1038/srep43727] [PMID: 28256624]
[http://dx.doi.org/10.1016/bs.mie.2018.08.018] [PMID: 30638536]
[http://dx.doi.org/10.1016/j.ab.2008.11.022] [PMID: 19070584]
[http://dx.doi.org/10.1002/chem.200903528] [PMID: 20496354]
[http://dx.doi.org/10.3389/fmolb.2018.00033] [PMID: 29696146]
[http://dx.doi.org/10.1002/bip.21530] [PMID: 20683937]
[http://dx.doi.org/10.1002/anie.201707682] [PMID: 28977722]
[http://dx.doi.org/10.1002/cbic.201800568] [PMID: 30379391]
[http://dx.doi.org/10.1021/jm0109154] [PMID: 11543674]
[http://dx.doi.org/10.1074/jbc.M710132200] [PMID: 18430729]
[http://dx.doi.org/10.1529/biophysj.107.126664] [PMID: 18456829]
[http://dx.doi.org/10.1186/1472-6807-14-4] [PMID: 24456893]
[http://dx.doi.org/10.1016/j.bioorg.2020.103861] [PMID: 32339813]
[http://dx.doi.org/10.1039/C5OB01237F] [PMID: 26119198]
[http://dx.doi.org/10.1021/ja044434w] [PMID: 15656629]
[http://dx.doi.org/10.1016/j.febslet.2006.08.084] [PMID: 16996060]
[http://dx.doi.org/10.1016/j.bmc.2017.10.036] [PMID: 29113739]
[http://dx.doi.org/10.1021/ja027691e] [PMID: 12515488]
[http://dx.doi.org/10.1016/j.jmr.2019.07.045] [PMID: 31345771]
[http://dx.doi.org/10.1016/S0022-2836(02)00241-3] [PMID: 12051947]
[http://dx.doi.org/10.1007/s10858-015-9959-y] [PMID: 26123317]
[http://dx.doi.org/10.1007/BF00417486] [PMID: 22911575]
[http://dx.doi.org/10.1016/0022-2836(91)90754-T] [PMID: 1847217]
[http://dx.doi.org/10.1023/A:1018383106236] [PMID: 9460241]
[http://dx.doi.org/10.2147/IJN.S89610] [PMID: 26508857]
[http://dx.doi.org/10.1016/0022-2836(85)90347-X] [PMID: 3839023]
[http://dx.doi.org/10.1023/A:1008391403193] [PMID: 20012763]
[http://dx.doi.org/10.1016/j.abb.2017.02.011] [PMID: 28263718]
[http://dx.doi.org/10.1007/BF00404272] [PMID: 22911360]
[http://dx.doi.org/10.1023/A:1026729404698] [PMID: 11200527]
[http://dx.doi.org/10.1093/bioinformatics/btu830] [PMID: 25505092]
[http://dx.doi.org/10.1002/prot.20449] [PMID: 15815974]
[http://dx.doi.org/10.1006/jmre.1998.1570] [PMID: 9878459]
[http://dx.doi.org/10.1016/j.jmr.2011.09.007] [PMID: 22152355]
[http://dx.doi.org/10.1023/A:1021614115432] [PMID: 12522306]
[http://dx.doi.org/10.1093/bioinformatics/bts078] [PMID: 22328784]
[http://dx.doi.org/10.1093/bioinformatics/btp225] [PMID: 19477998]
[http://dx.doi.org/10.1021/ja305091n] [PMID: 22794163]
[http://dx.doi.org/10.1007/BF00202037] [PMID: 22911044]
[http://dx.doi.org/10.1006/jmbi.1997.1052] [PMID: 9217263]
[http://dx.doi.org/10.1093/bioinformatics/btl589] [PMID: 17121777]
[http://dx.doi.org/10.1007/s10858-015-9955-2] [PMID: 26081575]
[http://dx.doi.org/10.1023/A:1020279503261] [PMID: 12398348]
[http://dx.doi.org/10.1007/s10858-014-9832-4] [PMID: 24845473]
[http://dx.doi.org/10.1007/978-1-4939-1465-4_16] [PMID: 25330971]
[http://dx.doi.org/10.1006/jmbi.1997.1284] [PMID: 9367762]
[http://dx.doi.org/10.1002/3527600663.ch2]
[http://dx.doi.org/10.1021/ja061136l] [PMID: 17017791]
[http://dx.doi.org/10.1385/0-89603-215-9:69]
[http://dx.doi.org/10.1002/jcc.20084] [PMID: 15264254]
[http://dx.doi.org/10.1016/0263-7855(96)00009-4] [PMID: 8744573]
[http://dx.doi.org/10.1016/0263-7855(96)00018-5] [PMID: 8744570]
[http://dx.doi.org/10.1006/jmbi.1994.1017] [PMID: 8289285]
[http://dx.doi.org/10.1093/protein/9.11.1063] [PMID: 8961360]
[http://dx.doi.org/10.1016/j.csbj.2019.07.010] [PMID: 31462972]
[http://dx.doi.org/10.1166/jnn.2008.18332] [PMID: 19051924]
[http://dx.doi.org/10.1007/BF00211160] [PMID: 8914272]
[http://dx.doi.org/10.1002/jcc.10349] [PMID: 14531054]
[http://dx.doi.org/10.1021/ja00124a002]
[http://dx.doi.org/10.1002/(SICI)1096-987X(20000130)21:2<79:AID-JCC1>3.0.CO;2-B]
[http://dx.doi.org/10.1016/j.str.2013.07.021] [PMID: 24010715]
[http://dx.doi.org/10.1016/j.str.2015.01.007] [PMID: 25651058]
[http://dx.doi.org/10.1371/journal.pone.0220656] [PMID: 31386688]
[http://dx.doi.org/10.1007/BF00228148] [PMID: 9008363]
[http://dx.doi.org/10.1023/B:JNMR.0000015420.44364.06] [PMID: 14872126]
[http://dx.doi.org/10.1007/s10858-009-9324-0] [PMID: 19436955]
[http://dx.doi.org/10.1007/s10858-010-9433-9] [PMID: 20628786]
[http://dx.doi.org/10.1007/s10858-010-9407-y] [PMID: 20446018]
[http://dx.doi.org/10.1007/s10858-011-9478-4] [PMID: 21448735]
[http://dx.doi.org/10.1002/prot.22756] [PMID: 20602353]
[http://dx.doi.org/10.1093/nar/gkq48] [PMID: 20513646]
[http://dx.doi.org/10.1002/prot.21165] [PMID: 17186527]
[http://dx.doi.org/10.1007/s10858-012-9669-7] [PMID: 22986687]
[http://dx.doi.org/10.1093/nar/gkr1134] [PMID: 22139937]
[http://dx.doi.org/10.1007/s10858-013-9753-7] [PMID: 23897031]
[http://dx.doi.org/10.1016/0263-7855(90)80070-V] [PMID: 2268628]
[http://dx.doi.org/10.1107/S0907444909042073] [PMID: 20057044]
[http://dx.doi.org/10.1002/pro.2007] [PMID: 22113924]
[http://dx.doi.org/10.1093/nar/gkp322] [PMID: 19429685]
[http://dx.doi.org/10.1002/prot.24213] [PMID: 23180575]
[http://dx.doi.org/10.1093/nar/gkl314] [PMID: 16844999]
[http://dx.doi.org/10.1023/A:1011208109853] [PMID: 11519750]
[http://dx.doi.org/10.1007/978-3-319-20164-1_3] [PMID: 26387100]
[http://dx.doi.org/10.1016/j.jmr.2014.01.005] [PMID: 24656077]
[http://dx.doi.org/10.1007/978-1-61779-480-3_8] [PMID: 22167672]