Abstract
The number of human deaths caused by malaria is increasing day-by-day. In fact, the mitochondrial proteins of the malaria parasite play vital roles in the organism. For developing effective drugs and vaccines against infection, it is necessary to accurately identify mitochondrial proteins of the malaria parasite. Although precise details for the mitochondrial proteins can be provided by biochemical experiments, they are expensive and time-consuming. In this review, we summarized the machine learning-based methods for mitochondrial proteins identification in the malaria parasite and compared the construction strategies of these computational methods. Finally, we also discussed the future development of mitochondrial proteins recognition with algorithms.
Keywords: Mitochondria proteins, malaria parasite, machine learning, database, feature, infection.
[http://dx.doi.org/10.1146/annurev.micro.091208.073424] [PMID: 19575561]
[http://dx.doi.org/10.5772/61283]
[http://dx.doi.org/10.1007/s10863-008-9176-4] [PMID: 18814021]
[http://dx.doi.org/10.1016/j.molbiopara.2003.07.001] [PMID: 14599665]
[http://dx.doi.org/10.1007/s00726-009-0381-1] [PMID: 19908123]
[http://dx.doi.org/10.1016/j.ab.2014.04.032] [PMID: 24802134]
[http://dx.doi.org/10.1007/s00726-011-0888-0] [PMID: 21445589]
[http://dx.doi.org/10.1016/j.biochi.2011.01.013] [PMID: 21281691]
[http://dx.doi.org/10.1016/j.peptides.2009.06.032] [PMID: 19591890]
[http://dx.doi.org/10.1371/journal.pone.0145541] [PMID: 26713618]
[http://dx.doi.org/10.1007/s00726-010-0825-7] [PMID: 21191803]
[http://dx.doi.org/10.1016/j.compbiomed.2013.07.024] [PMID: 24034742]
[http://dx.doi.org/10.1007/s00726-014-1862-4] [PMID: 25385313]
[http://dx.doi.org/10.2174/1570178615666180608100348]
[PMID: 29106639]
[PMID: 27543076]
[http://dx.doi.org/10.1093/nar/gkw1052] [PMID: 27899615]
[http://dx.doi.org/10.1038/s41598-017-08115-6] [PMID: 28784999]
[http://dx.doi.org/10.1038/srep30441] [PMID: 27443605]
[PMID: 28171531]
[http://dx.doi.org/10.1093/nar/gky1051] [PMID: 30380072]
[http://dx.doi.org/10.1093/bib/bbx103] [PMID: 28968812]
[http://dx.doi.org/10.3389/fgene.2019.00003] [PMID: 30761178]
[http://dx.doi.org/10.1098/rsob.190054] [PMID: 31164042]
[http://dx.doi.org/10.1109/ACCESS.2018.2889809]
[http://dx.doi.org/10.1093/bioinformatics/btl158] [PMID: 16731699]
[http://dx.doi.org/10.1093/bioinformatics/btq003] [PMID: 20053844]
[http://dx.doi.org/10.1093/bib/bby090] [PMID: 30239587]
[PMID: 8071322]
[http://dx.doi.org/10.1002/prot.340210406] [PMID: 7567954]
[http://dx.doi.org/10.1016/j.jtbi.2010.11.017] [PMID: 21110985]
[http://dx.doi.org/10.1016/j.bbrc.2006.06.059] [PMID: 16808903]
[http://dx.doi.org/10.1186/1471-2105-10-434] [PMID: 20021687]
[http://dx.doi.org/10.1016/j.compbiomed.2012.08.005] [PMID: 22985817]
[http://dx.doi.org/10.1007/s00726-010-0639-7] [PMID: 20549269]
[http://dx.doi.org/10.1016/j.jtbi.2010.09.002] [PMID: 20826168]
[http://dx.doi.org/10.1007/s10930-010-9269-x] [PMID: 20658312]
[http://dx.doi.org/10.1002/prot.1072]
[http://dx.doi.org/10.1007/s00726-011-0902-6] [PMID: 21505826]
[http://dx.doi.org/10.1007/s00726-011-1143-4] [PMID: 22102053]
[http://dx.doi.org/10.1016/j.ab.2011.01.040] [PMID: 21295004]
[http://dx.doi.org/10.1039/C5MB00883B] [PMID: 26883492]
[http://dx.doi.org/10.1093/bioinformatics/btw564] [PMID: 27565583]
[http://dx.doi.org/10.1109/TCBB.2011.117] [PMID: 21860064]
[http://dx.doi.org/10.2174/157340613804488341] [PMID: 22931491]
[http://dx.doi.org/10.1016/j.jtbi.2013.08.037] [PMID: 24035842]
[http://dx.doi.org/10.2174/092986613804725307] [PMID: 22894156]
[http://dx.doi.org/10.1016/j.jtbi.2009.11.016] [PMID: 19961864]
[http://dx.doi.org/10.1155/2013/530696] [PMID: 23762187]
[http://dx.doi.org/10.1155/2013/567529] [PMID: 24062796]
[http://dx.doi.org/10.1155/2016/5413903] [PMID: 27597968]
[http://dx.doi.org/10.1155/2016/1654623] [PMID: 27437396]
[http://dx.doi.org/10.1016/j.jmb.2011.02.053] [PMID: 21377472]
[http://dx.doi.org/10.1073/pnas.78.6.3824] [PMID: 6167991]
[PMID: 2451516]
[http://dx.doi.org/10.1016/0022-5193(78)90302-8] [PMID: 625122]
[http://dx.doi.org/10.1006/jtbi.2001.2441] [PMID: 11735294]
[http://dx.doi.org/10.2174/092986610791112710] [PMID: 19645687]
[http://dx.doi.org/10.1371/journal.pone.0004920] [PMID: 19290060]
[http://dx.doi.org/10.1093/bioinformatics/btq043] [PMID: 20130033]
[http://dx.doi.org/10.1093/protein/12.12.1041] [PMID: 10611397]
[http://dx.doi.org/10.1093/bib/bby053] [PMID: 29947743]
[http://dx.doi.org/10.1016/S0006-3495(03)74937-6] [PMID: 12547802]
[http://dx.doi.org/10.1093/bioinformatics/btg280] [PMID: 14594710]
[http://dx.doi.org/10.1016/j.knosys.2018.10.007]
[http://dx.doi.org/10.1155/2014/286419] [PMID: 24991545]
[http://dx.doi.org/10.3934/mbe.2019123] [PMID: 31137222]
[http://dx.doi.org/10.1007/s00438-015-1044-4] [PMID: 25896721]
[http://dx.doi.org/10.1186/s12918-016-0353-5] [PMID: 28155714]
[http://dx.doi.org/10.1155/2014/935719] [PMID: 24804260]
[http://dx.doi.org/10.2174/1574893612666170125124538]
[http://dx.doi.org/10.1016/j.ymeth.2016.08.014] [PMID: 27592382]
[http://dx.doi.org/10.1016/j.neucom.2014.12.123]
[http://dx.doi.org/10.1111/trf.14790] [PMID: 30203486]
[http://dx.doi.org/10.1021/acs.analchem.5b03483] [PMID: 26959230]
[PMID: 30247625]
[PMID: 30428009]
[http://dx.doi.org/10.1007/BF02351013] [PMID: 14977225]
[http://dx.doi.org/10.1093/bioinformatics/bty039] [PMID: 29420699]
[http://dx.doi.org/10.1007/s11030-009-9205-1] [PMID: 19908156]
[http://dx.doi.org/10.1261/rna.069112.118] [PMID: 30425123]
[http://dx.doi.org/10.1007/s10729-019-09498-w] [PMID: 31686276]
[http://dx.doi.org/10.2174/1570178614666170227143434]
[http://dx.doi.org/10.2174/1570178614666170421164731]
[PMID: 28186907]
[http://dx.doi.org/10.3389/fmicb.2018.00955] [PMID: 29867860]
[http://dx.doi.org/10.7150/ijbs.24174] [PMID: 29989085]
[http://dx.doi.org/10.7150/ijbs.24616] [PMID: 29989083]
[http://dx.doi.org/10.3389/fmicb.2018.00476] [PMID: 29616000]
[http://dx.doi.org/10.1093/bioinformatics/btx222] [PMID: 28419290]
[http://dx.doi.org/10.2174/1570178614666170221144023]
[http://dx.doi.org/10.1093/bib/bbz123] [PMID: 31633777]
[http://dx.doi.org/10.1093/bioinformatics/bty070] [PMID: 29432522]
[http://dx.doi.org/10.3389/fgene.2019.00033] [PMID: 30809242]
[http://dx.doi.org/10.1021/acs.jproteome.9b00250] [PMID: 31136183]
[http://dx.doi.org/10.1016/j.ymeth.2019.02.009] [PMID: 30772464]
[PMID: 31157855]
[http://dx.doi.org/10.1093/bioinformatics/bty002] [PMID: 29365045]
[http://dx.doi.org/10.1186/s12864-017-4338-6] [PMID: 29363423]
[http://dx.doi.org/10.1371/journal.pone.0226595] [PMID: 32023246]
[http://dx.doi.org/10.2174/1574893613666181113131415]
[http://dx.doi.org/10.1016/j.omtn.2019.05.028] [PMID: 31299595]
[http://dx.doi.org/10.1093/bioinformatics/btx479] [PMID: 28961687]
[http://dx.doi.org/10.1109/BIBM.2013.6732451]
[http://dx.doi.org/10.1039/C4MB00645C] [PMID: 25437899]
[PMID: 29416743]
[http://dx.doi.org/10.18632/oncotarget.20365] [PMID: 29100375]
[http://dx.doi.org/10.2174/1574893611666160815102521]
[http://dx.doi.org/10.1007/s00726-009-0292-1] [PMID: 19387791]
[http://dx.doi.org/10.1007/s12250-016-3740-6] [PMID: 27151186]
[http://dx.doi.org/10.1093/bioinformatics/btz015] [PMID: 30624619]
[http://dx.doi.org/10.1155/2013/567529] [PMID: 24062796]
[http://dx.doi.org/10.1155/2013/530696] [PMID: 23762187]
[http://dx.doi.org/10.2174/1389450119666181002143355] [PMID: 30277150]
[http://dx.doi.org/10.1038/nature09486] [PMID: 20962839]
[http://dx.doi.org/10.1093/nar/gkj079] [PMID: 16381859]
[http://dx.doi.org/10.1186/1471-2105-4-41] [PMID: 12969510]
[http://dx.doi.org/10.1093/nar/gkl951] [PMID: 17135202]
[http://dx.doi.org/10.2174/092986610791190372] [PMID: 19961429]
[http://dx.doi.org/10.1002/pmic.200700638] [PMID: 18297652]
[http://dx.doi.org/10.1002/jcc.21170] [PMID: 19086060]
[http://dx.doi.org/10.2174/156802608786786543] [PMID: 19075774]
[http://dx.doi.org/10.1016/j.biochi.2011.12.003] [PMID: 22182488]
[http://dx.doi.org/10.1109/TPAMI.2005.159] [PMID: 16119262]
[http://dx.doi.org/10.1109/TBME.2007.905388]
[http://dx.doi.org/10.2174/1574893611666160711162006]
[http://dx.doi.org/10.2174/1574893611666160628074537]
[http://dx.doi.org/10.1016/j.neucom.2018.04.082]
[http://dx.doi.org/10.1016/j.compag.2018.10.006]
[http://dx.doi.org/10.1021/acs.jproteome.9b00012] [PMID: 30698979]
[http://dx.doi.org/10.12688/f1000research.16200.1] [PMID: 31723409]
[http://dx.doi.org/10.1002/minf.201500031] [PMID: 27491037]